Detail Information

Basic Information:


  VIRBase ID:  

VHID00413391

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART21-5p:           SATB2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART21-5p SATB2
miRBase
Accession/Entrez ID		 MIMAT0010130 23314
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - GLSS

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SATB2
chr2:200293647(-) A-I      intronic
chr2:200281647(-) A-I      intronic
chr2:200271946(-) A-I      intronic
chr2:200239521(-) A-I      intronic
chr2:200244775(-) A-I      intronic
chr2:200244786(-) A-I      intronic
chr2:200291247(-) A-I      intronic
chr2:200244787(-) A-I      intronic
chr2:200291176(-) A-I      intronic
chr2:200244880(-) A-I      intronic
chr2:200300183(-) A-I      intronic
chr2:200300196(-) A-I      intronic
chr2:200215987(-) A-I      intronic
chr2:200244789(-) A-I      intronic
chr2:200263840(-) A-I      intronic
chr2:200274106(-) A-I      intronic
chr2:200239490(-) A-I      intronic
chr2:200293591(-) A-I      intronic
chr2:200266154(-) A-I      intronic
chr2:200291108(-) A-I      intronic
chr2:200215911(-) A-I      intronic
chr2:200293646(-) A-I      intronic
chr2:200274058(-) A-I      intronic
chr2:200218090(-) A-I      intronic
chr2:200291780(-) A-I      intronic
chr2:200262355(-) A-I      intronic
chr2:200244893(-) A-I      intronic
chr2:200215912(-) A-I      intronic
chr2:200305860(-) A-I      intronic
chr2:200274100(-) A-I      intronic
chr2:200249955(-) A-I      intronic
chr2:200274096(-) A-I      intronic
chr2:200244674(-) A-I      intronic
chr2:200226665(-) A-I      intronic
chr2:200202830(-) A-I      intronic
chr2:200291090(-) A-I      intronic
chr2:200244731(-) A-I      intronic
chr2:200215646(-) A-I      intronic
chr2:200244675(-) A-I      intronic
chr2:200218006(-) A-I      intronic
chr2:200293677(-) A-I      intronic
chr2:200244745(-) A-I      intronic
chr2:200293642(-) A-I      intronic
chr2:200273989(-) A-I      intronic
chr2:200244800(-) A-I      intronic
chr2:200291127(-) A-I      intronic
chr2:200293510(-) A-I      intronic
chr2:200273940(-) A-I      intronic
chr2:200274032(-) A-I      intronic
chr2:200293643(-) A-I      intronic
chr2:200250134(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SATB2
chr2:200134480-200134481(-) m1A 3'UTR       26863410
chr2:200134706-200134707(-) Y 3'UTR       26075521
chr2:200135650-200135651(-) m6A 3'UTR       27773535
chr2:200135716-200135717(-) m6A 3'UTR       24981863//27773535
chr2:200136363-200136364(-) m6A 3'UTR       24284625//24981863//22608085
chr2:200136399-200136400(-) m6A 3'UTR       24284625//24981863//22608085
chr2:200136420-200136421(-) m6A 3'UTR       24981863//27773535//22608085
chr2:200136447-200136448(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr2:200136469-200136470(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr2:200136475-200136476(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr2:200136567-200136568(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr2:200136631-200136632(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr2:200136695-200136696(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr2:200136712-200136713(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr2:200136741-200136742(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr2:200136773-200136774(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr2:200136927-200136928(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22608085
chr2:200137141-200137142(-) m6A CDS       24284625//24981863//27773535//22608085
chr2:200137167-200137168(-) m6A CDS       24284625//24981863//27773535//22608085
chr2:200137213-200137214(-) m6A CDS       24284625//24981863//27773535//22608085
chr2:200137309-200137310(-) m6A CDS       24284625//24981863//27773535
chr2:200137383-200137384(-) m6A CDS       27773535
chr2:200173585-200173586(-) m6A CDS//exon       27773535
chr2:200173612-200173613(-) m6A CDS//exon       27773535
chr2:200173630-200173631(-) m6A CDS//exon       27773535
chr2:200173645-200173646(-) m6A CDS//exon       27773535
chr2:200173665-200173666(-) m6A CDS//exon       27773535
chr2:200188655-200188656(-) m6A CDS//exon       24284625//27773535
chr2:200188674-200188675(-) m6A CDS//exon       24284625//27773535
chr2:200193428-200193429(-) m6A CDS//exon       24284625//27773535
chr2:200193565-200193566(-) m6A CDS//exon       -
chr2:200213574-200213575(-) m6A CDS//exon       24284625//24981863//27773535
chr2:200213643-200213644(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr2:200213745-200213746(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr2:200213789-200213790(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr2:200213797-200213798(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr2:200213820-200213821(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr2:200213865-200213866(-) m6A CDS//exon       24981863//27773535//22608085
chr2:200213874-200213875(-) m6A CDS//exon       24981863//27773535//22608085
chr2:200246518-200246519(-) m6A CDS//exon//intron       -
chr2:200320725-200320726(-) m6A CDS       27773535//27371828//27773536
chr2:200320783-200320784(-) m6A 5'UTR//exon       25456834//27773535//27371828//27773536
chr2:200322074-200322075(-) m6A 5'UTR//intron       24284625//25456834//24981863//27773535//27371828//22608085
chr2:200322101-200322102(-) m6A 5'UTR//intron       24284625//25456834//24981863//27773535//27371828//22608085
chr2:200322137-200322138(-) m6A 5'UTR//intron       24284625//25456834//24981863//27773535//27371828//22608085
chr2:200322161-200322162(-) m6A 5'UTR//intron       24284625//25456834//24981863//27773535//27371828//22608085
chr2:200322170-200322171(-) m6A 5'UTR//intron       24284625//25456834//24981863//27773535//27371828//22608085
chr2:200322208-200322209(-) m6A 5'UTR//intron       24284625//25456834//24981863//27773535//27371828//22608085
chr2:200322216-200322217(-) m6A 5'UTR//intron       24284625//25456834//24981863//27773535//27371828//22608085
chr2:200322223-200322224(-) m6A 5'UTR//intron       24284625//25456834//24981863//27773535//27371828//22608085
chr2:200322238-200322239(-) m6A 5'UTR//intron       24284625//25456834//24981863//27773535//27371828//22608085
chr2:200322483-200322484(-) m6A 5'UTR//intron       -
chr2:200322737-200322738(-) m6A 5'UTR//intron       24284625//25456834//24981863//27773535//22608085
chr2:200322750-200322751(-) m6A 5'UTR//intron       24284625//25456834//24981863//27773535//22608085
chr2:200322757-200322758(-) m6A 5'UTR//intron       24284625//25456834//24981863//27773535//22608085
chr2:200322786-200322787(-) m6A 5'UTR//intron       24284625//25456834//24981863
chr2:200322838-200322839(-) m6A 5'UTR//intron       24284625//25456834//24981863//27773535//27371828
chr2:200322897-200322898(-) m6A 5'UTR//intron       24284625//27773535
chr2:200323246-200323247(-) m6A 5'UTR//intron       24209618//25456834//27371828//27773536
chr2:200323251-200323252(-) m6A 5'UTR//intron       24209618//25456834//27371828//27773536
chr2:200323270-200323271(-) m6A 5'UTR//intron       24209618//27371828//27773536
chr2:200325211-200325212(-) m6A 5'UTR//exon       24981863//22608085
chr2:200325245-200325246(-) m6A 5'UTR//exon       24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SATB2
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART21-5p
Interactor2: SATB2

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

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