Basic Information:

  VIRBase ID:  

VHID00413131

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART21-5p:  MIMAT0010130          SYNJ1:  NM_003895     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART21-5p	SYNJ1
miRBase Accession/Entrez ID	MIMAT0010130	8867
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DEE53//EIEE53//INPP5G//PARK20

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SYNJ1	chr21:34009892(-) A-I      intronic chr21:34009894(-) A-I      intronic chr21:34009808(-) A-I      intronic chr21:34082010(-) A-I      intronic chr21:34082101(-) A-I      intronic chr21:34082246(-) A-I      intronic chr21:34082413(-) A-I      intronic chr21:34010481(-) A-I      intronic chr21:34009942(-) A-I      intronic chr21:34010777(-) A-I      intronic chr21:34005278(-) A-I      intronic chr21:34010950(-) A-I      intronic chr21:34077359(-) A-I      intronic chr21:34081207(-) A-I      intronic chr21:34079794(-) A-I      intronic chr21:34068289(-) A-I      intronic chr21:34081630(-) A-I      intronic chr21:34043402(-) A-I      intronic chr21:34004884(-) A-I      intronic chr21:34004798(-) A-I      intronic chr21:34005273(-) A-I      intronic chr21:34096019(-) A-I      intronic chr21:34077292(-) A-I      intronic chr21:34077290(-) A-I      intronic chr21:34081951(-) A-I      intronic chr21:34072853(-) A-I      intronic chr21:34004895(-) A-I      intronic chr21:34005267(-) A-I      intronic chr21:34081762(-) A-I      intronic chr21:34009851(-) A-I      intronic chr21:34068111(-) A-I      intronic chr21:34010476(-) A-I      intronic chr21:34082312(-) A-I      intronic chr21:34010579(-) A-I      intronic chr21:34079871(-) A-I      intronic chr21:34098401(-) A-I      intronic chr21:34094643(-) A-I      intronic chr21:34005161(-) A-I      intronic chr21:34005198(-) A-I      intronic chr21:34082317(-) A-I      intronic chr21:34009815(-) A-I      intronic chr21:34093821(-) A-I      intronic chr21:34065116(-) A-I      intronic chr21:34004768(-) A-I      intronic chr21:34044829(-) A-I      intronic chr21:34009879(-) A-I      intronic chr21:34082471(-) A-I      intronic chr21:34004764(-) A-I      intronic chr21:34093824(-) A-I      intronic chr21:34004968(-) A-I      intronic chr21:34068285(-) A-I      intronic chr21:34044325(-) A-I      intronic chr21:34044108(-) A-I      intronic chr21:34044788(-) A-I      intronic chr21:34079630(-) A-I      intronic chr21:34094668(-) A-I      intronic chr21:34010643(-) A-I      intronic chr21:34044828(-) A-I      intronic chr21:34093877(-) A-I      intronic chr21:34009847(-) A-I      intronic chr21:34004856(-) A-I      intronic chr21:34004870(-) A-I      intronic chr21:34009816(-) A-I      intronic chr21:34005163(-) A-I      intronic chr21:34089408(-) A-I      intronic chr21:34079939(-) A-I      intronic chr21:34011005(-) A-I      intronic chr21:34062944(-) A-I      intronic chr21:34095961(-) A-I      intronic chr21:34079843(-) A-I      intronic chr21:34044896(-) A-I      intronic chr21:34011000(-) A-I      intronic chr21:34065105(-) A-I      intronic chr21:34004844(-) A-I      intronic chr21:34004938(-) A-I      intronic chr21:34005166(-) A-I      intronic chr21:34082474(-) A-I      intronic chr21:34005303(-) A-I      intronic chr21:34044832(-) A-I      intronic chr21:34004947(-) A-I      intronic chr21:34004792(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SYNJ1	chr21:34002641-34002642(-) m6A 3'UTR       27773535 chr21:34002666-34002667(-) m6A 3'UTR       27773535 chr21:34002747-34002748(-) m6A 3'UTR       27773535 chr21:34003019-34003020(-) m6A 3'UTR       27773535 chr21:34003036-34003037(-) m6A 3'UTR       27773535//22608085 chr21:34003073-34003074(-) m6A 3'UTR       24981863//27773535//22608085 chr21:34003128-34003129(-) m6A 3'UTR       24981863//27773535//22608085 chr21:34003156-34003157(-) m6A 3'UTR       24981863//27773535//22608085 chr21:34003185-34003186(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr21:34003287-34003288(-) m6A 3'UTR       24284625//24209618//24981863//27773535//27371828//22608085 chr21:34003320-34003321(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr21:34003415-34003416(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr21:34003521-34003522(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//27371828//22608085 chr21:34003638-34003639(-) m6A 3'UTR//CDS       24284625//24981863//27773535//27371828//22608085 chr21:34003782-34003783(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr21:34003798-34003799(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr21:34003819-34003820(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr21:34003845-34003846(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22608085 chr21:34003974-34003975(-) m6A 3'UTR//CDS       24284625//27773535//22608085 chr21:34004104-34004105(-) m6A 3'UTR//CDS       27773535 chr21:34011288-34011289(-) m6A CDS       27773535 chr21:34011415-34011416(-) m6A CDS       27773535 chr21:34011998-34011999(-) m6A CDS       27773535 chr21:34012023-34012024(-) m6A CDS       27773535 chr21:34018726-34018727(-) m6A CDS       27773535 chr21:34018748-34018749(-) m6A CDS       27773535 chr21:34018807-34018808(-) m6A CDS       27773535 chr21:34018877-34018878(-) m6A CDS       27773535 chr21:34100180-34100181(-) m6A 5'UTR//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SYNJ1	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART21-5p
Interactor2: SYNJ1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg