Basic Information:

  VIRBase ID:  

VHID00413111

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART21-5p:  MIMAT0010130          PRKRA:  NM_001139518     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART21-5p	PRKRA
miRBase Accession/Entrez ID	MIMAT0010130	8575
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DYT16//HSD14//PACT//RAX

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PRKRA	chr2:179300058(-) A-I      intronic chr2:179300064(-) A-I      intronic chr2:179300066(-) A-I      intronic chr2:179310789(-) A-I      intronic chr2:179298940(-) A-I      intronic chr2:179300074(-) A-I      intronic chr2:179310780(-) A-I      intronic chr2:179298943(-) A-I      intronic chr2:179298966(-) A-I      intronic chr2:179298975(-) A-I      intronic chr2:179300047(-) A-I      intronic chr2:179300048(-) A-I      intronic chr2:179310898(-) A-I      intronic chr2:179310890(-) A-I      intronic chr2:179310547(-) A-I      intronic chr2:179310534(-) A-I      intronic chr2:179310880(-) A-I      intronic chr2:179310725(-) A-I      intronic chr2:179310663(-) A-I      intronic chr2:179310653(-) A-I      intronic chr2:179310641(-) A-I      intronic chr2:179310638(-) A-I      intronic chr2:179310632(-) A-I      intronic chr2:179311663(-) A-I      intronic chr2:179311657(-) A-I      intronic chr2:179311620(-) A-I      intronic chr2:179311611(-) A-I      intronic chr2:179311608(-) A-I      intronic chr2:179311598(-) A-I      intronic chr2:179311572(-) A-I      intronic chr2:179311571(-) A-I      intronic chr2:179311539(-) A-I      intronic chr2:179311531(-) A-I      intronic chr2:179311492(-) A-I      intronic chr2:179310961(-) A-I      intronic chr2:179310946(-) A-I      intronic chr2:179310945(-) A-I      intronic chr2:179310938(-) A-I      intronic chr2:179310937(-) A-I      intronic chr2:179310935(-) A-I      intronic chr2:179310606(-) A-I      intronic chr2:179310625(-) A-I      intronic chr2:179310915(-) A-I      intronic chr2:179310906(-) A-I      intronic chr2:179310902(-) A-I      intronic chr2:179310622(-) A-I      intronic chr2:179310879(-) A-I      intronic chr2:179310809(-) A-I      intronic chr2:179310596(-) A-I      intronic chr2:179310595(-) A-I      intronic chr2:179310543(-) A-I      intronic chr2:179310700(-) A-I      intronic chr2:179306727(-) A-I      intronic chr2:179310550(-) A-I      intronic chr2:179310814(-) A-I      intronic chr2:179310634(-) A-I      intronic chr2:179299988(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PRKRA	chr2:179298405(-) A-I intron -    22327324 chr2:179299291(-) A-I intron -    22327324 chr2:179299628(-) A-I intron -    22327324 chr2:179299647(-) A-I intron -    22327324 chr2:179299662(-) A-I intron -    22327324 chr2:179299758(-) A-I intron -    22327324 chr2:179299864(-) A-I intron -    22327324 chr2:179299876(-) A-I intron -    22327324 chr2:179299883(-) A-I intron -    22327324 chr2:179300016(-) A-I intron -    22327324 chr2:179300030(-) A-I intron -    22327324 chr2:179300031(-) A-I intron -    22327324 chr2:179303617(-) A-I intron -    22327324 chr2:179303641(-) A-I intron -    22327324 chr2:179310809(-) A-I intron -    22327324 chr2:179310815(-) A-I intron -    22327324

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PRKRA	chr2:179315103-179315104(-) m6A CDS//exon       - chr2:179315207-179315208(-) m6A 5'UTR//intron       27773536 chr2:179315245-179315246(-) m6A 5'UTR//intron       27773536 chr2:179315699-179315700(-) m6A 5'UTR//CDS//exon       27371828//27773536 chr2:179315707-179315708(-) m6A 5'UTR//CDS//exon       25456834//27371828//27773536//22575960 chr2:179315829-179315830(-) m6A 5'UTR//exon//intron       25456834//24981863//27371828//27773536//22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PRKRA	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART21-5p
Interactor2: PRKRA

Evidence Support:

Prediction-Evidence	cRep//miRanda
Support Database	RepTar//VmiReg