Detail Information

Basic Information:


  VIRBase ID:  

VHID00412232

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART5-3p:           KCTD10:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART5-3p KCTD10
miRBase
Accession/Entrez ID		 MIMAT0009205 83892
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - BTBD28//hBACURD3//MSTP028//ULRO61

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR KCTD10
chr12:109891110(-) A-I      intronic
chr12:109891116(-) A-I      intronic
chr12:109891176(-) A-I      intronic
chr12:109891100(-) A-I      intronic
chr12:109890903(-) A-I      intronic
chr12:109890901(-) A-I      intronic
chr12:109891175(-) A-I      intronic
chr12:109891180(-) A-I      intronic
chr12:109891202(-) A-I      intronic
chr12:109905303(-) A-I      intronic
chr12:109892594(-) A-I      intronic
chr12:109892580(-) A-I      intronic
chr12:109891200(-) A-I      intronic
chr12:109891133(-) A-I      intronic
chr12:109890823(-) A-I      intronic
chr12:109892560(-) A-I      intronic
chr12:109890817(-) A-I      intronic
chr12:109890811(-) A-I      intronic
chr12:109890791(-) A-I      intronic
chr12:109892680(-) A-I      intronic
chr12:109892671(-) A-I      intronic
chr12:109892596(-) A-I      intronic
chr12:109892590(-) A-I      intronic
chr12:109892586(-) A-I      intronic
chr12:109892574(-) A-I      intronic
chr12:109890814(-) A-I      intronic
chr12:109890813(-) A-I      intronic
chr12:109890808(-) A-I      intronic
chr12:109890740(-) A-I      intronic
chr12:109890790(-) A-I      intronic
chr12:109891159(-) A-I      intronic
chr12:109891162(-) A-I      intronic
chr12:109892683(-) A-I      intronic
chr12:109890774(-) A-I      intronic
chr12:109890773(-) A-I      intronic
chr12:109892595(-) A-I      intronic
chr12:109890769(-) A-I      intronic
chr12:109890767(-) A-I      intronic
chr12:109890757(-) A-I      intronic
chr12:109892627(-) A-I      intronic
chr12:109892648(-) A-I      intronic
chr12:109892649(-) A-I      intronic
chr12:109892687(-) A-I      intronic
chr12:109892654(-) A-I      intronic
chr12:109892688(-) A-I      intronic
chr12:109892690(-) A-I      intronic
chr12:109892691(-) A-I      intronic
chr12:109892698(-) A-I      intronic
chr12:109892722(-) A-I      intronic
chr12:109892664(-) A-I      intronic
chr12:109892669(-) A-I      intronic
chr12:109892681(-) A-I      intronic
chr12:109890918(-) A-I      intronic
chr12:109890913(-) A-I      intronic
chr12:109891245(-) A-I      intronic
chr12:109905257(-) A-I      intronic
chr12:109892476(-) A-I      intronic
chr12:109892317(-) A-I      intronic
chr12:109892304(-) A-I      intronic
chr12:109892271(-) A-I      intronic
chr12:109891270(-) A-I      intronic
chr12:109891248(-) A-I      intronic
chr12:109891093(-) A-I      intronic
chr12:109891005(-) A-I      intronic
chr12:109890950(-) A-I      intronic
chr12:109891092(-) A-I      intronic
chr12:109891277(-) A-I      intronic
chr12:109890942(-) A-I      intronic
chr12:109891013(-) A-I      intronic
chr12:109887367(-) A-I      3'UTR
chr12:109887449(-) A-I      3'UTR
chr12:109887448(-) A-I      3'UTR
chr12:109905315(-) A-I      intronic
chr12:109913160(-) A-I      intronic
chr12:109890949(-) A-I      intronic
chr12:109905292(-) A-I      intronic
chr12:109905190(-) A-I      intronic
chr12:109890998(-) A-I      intronic
chr12:109891123(-) A-I      intronic
chr12:109892482(-) A-I      intronic
chr12:109892368(-) A-I      intronic
chr12:109891271(-) A-I      intronic
chr12:109892498(-) A-I      intronic
chr12:109891198(-) A-I      intronic
chr12:109891127(-) A-I      intronic
chr12:109905272(-) A-I      intronic
chr12:109887347(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED KCTD10
chr12:109905315(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase KCTD10
chr12:109888281-109888282(-) m6A 3'UTR//exon       27773535
chr12:109888334-109888335(-) m6A 3'UTR//exon       27773535
chr12:109888340-109888341(-) m6A 3'UTR//exon       27773535
chr12:109888382-109888383(-) m6A 3'UTR//exon       27773535
chr12:109888516-109888517(-) m6A 3'UTR//exon       27773535
chr12:109888650-109888651(-) m6A 3'UTR//exon       27773535
chr12:109888676-109888677(-) m6A 3'UTR//exon       27773535
chr12:109889197-109889198(-) m6A 3'UTR//exon       24209618
chr12:109889387-109889388(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr12:109889543-109889544(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr12:109889577-109889578(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:109889584-109889585(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:109893931-109893932(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr12:109895497-109895498(-) m6A exon//intron       27773535
chr12:109895881-109895882(-) m6A 3'UTR//5'UTR//CDS//exon//intron       27773535
chr12:109896062-109896063(-) m6A 5'UTR//exon//intron       -
chr12:109907618-109907619(-) m6A 3'UTR//intron       24981863
chr12:109915176-109915177(-) m6A 5'UTR       24981863
chr12:109915243-109915244(-) m6A 5'UTR       24981863
chr12:109915274-109915275(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate KCTD10
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART5-3p
Interactor2: KCTD10

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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