Basic Information:

  VIRBase ID:  

VHID00411847

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART5-3p:  MIMAT0009205          KCTD2:  NR_110835     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART5-3p	KCTD2
miRBase Accession/Entrez ID	MIMAT0009205	23510
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	KCTD2	chr17:73048433(+) A-I      intronic chr17:73054254(+) A-I      intronic chr17:73054257(+) A-I      intronic chr17:73048448(+) A-I      intronic chr17:73048442(+) A-I      intronic chr17:73050254(+) A-I      intronic chr17:73048461(+) A-I      intronic chr17:73048588(+) A-I      intronic chr17:73048602(+) A-I      intronic chr17:73051200(+) A-I      intronic chr17:73048607(+) A-I      intronic chr17:73048615(+) A-I      intronic chr17:73051205(+) A-I      intronic chr17:73051727(+) A-I      intronic chr17:73051742(+) A-I      intronic chr17:73054666(+) A-I      intronic chr17:73054554(+) A-I      intronic chr17:73054549(+) A-I      intronic chr17:73054343(+) A-I      intronic chr17:73055114(+) A-I      intronic chr17:73055036(+) A-I      intronic chr17:73054324(+) A-I      intronic chr17:73054276(+) A-I      intronic chr17:73054186(+) A-I      intronic chr17:73054117(+) A-I      intronic chr17:73055009(+) A-I      intronic chr17:73054783(+) A-I      intronic chr17:73054016(+) A-I      intronic chr17:73053821(+) A-I      intronic chr17:73053204(+) A-I      intronic chr17:73054773(+) A-I      intronic chr17:73053073(+) A-I      intronic chr17:73052083(+) A-I      intronic chr17:73052005(+) A-I      intronic chr17:73051807(+) A-I      intronic chr17:73051781(+) A-I      intronic chr17:73051743(+) A-I      intronic chr17:73051555(+) A-I      intronic chr17:73051197(+) A-I      intronic chr17:73051193(+) A-I      intronic chr17:73050852(+) A-I      intronic chr17:73050808(+) A-I      intronic chr17:73050798(+) A-I      intronic chr17:73050787(+) A-I      intronic chr17:73050270(+) A-I      intronic chr17:73050168(+) A-I      intronic chr17:73050156(+) A-I      intronic chr17:73050143(+) A-I      intronic chr17:73054751(+) A-I      intronic chr17:73049688(+) A-I      intronic chr17:73049677(+) A-I      intronic chr17:73049629(+) A-I      intronic chr17:73047208(+) A-I      intronic chr17:73047198(+) A-I      intronic chr17:73049698(+) A-I      intronic chr17:73054733(+) A-I      intronic chr17:73046610(+) A-I      intronic chr17:73047186(+) A-I      intronic chr17:73047053(+) A-I      intronic chr17:73054732(+) A-I      intronic chr17:73047047(+) A-I      intronic chr17:73054729(+) A-I      intronic chr17:73054121(+) A-I      intronic chr17:73048896(+) A-I      intronic chr17:73054843(+) A-I      intronic chr17:73050230(+) A-I      intronic chr17:73052055(+) A-I      intronic chr17:73050875(+) A-I      intronic chr17:73051169(+) A-I      intronic chr17:73054387(+) A-I      intronic chr17:73050827(+) A-I      intronic chr17:73050225(+) A-I      intronic chr17:73052047(+) A-I      intronic chr17:73050805(+) A-I      intronic chr17:73053229(+) A-I      intronic chr17:73053271(+) A-I      intronic chr17:73050823(+) A-I      intronic chr17:73048404(+) A-I      intronic chr17:73054035(+) A-I      intronic chr17:73053948(+) A-I      intronic chr17:73054104(+) A-I      intronic chr17:73050370(+) A-I      intronic chr17:73052110(+) A-I      intronic chr17:73052006(+) A-I      intronic chr17:73050300(+) A-I      intronic chr17:73048583(+) A-I      intronic chr17:73051961(+) A-I      intronic chr17:73053836(+) A-I      intronic chr17:73049600(+) A-I      intronic chr17:73051556(+) A-I      intronic chr17:73053711(+) A-I      intronic chr17:73053719(+) A-I      intronic chr17:73048471(+) A-I      intronic chr17:73052015(+) A-I      intronic chr17:73053918(+) A-I      intronic chr17:73053301(+) A-I      intronic chr17:73049591(+) A-I      intronic chr17:73051776(+) A-I      intronic chr17:73051992(+) A-I      intronic chr17:73050734(+) A-I      intronic chr17:73051249(+) A-I      intronic chr17:73053150(+) A-I      intronic chr17:73054272(+) A-I      intronic chr17:73050382(+) A-I      intronic chr17:73054328(+) A-I      intronic chr17:73050851(+) A-I      intronic chr17:73047267(+) A-I      intronic chr17:73051778(+) A-I      intronic chr17:73050032(+) A-I      intronic chr17:73049721(+) A-I      intronic chr17:73050830(+) A-I      intronic chr17:73051289(+) A-I      intronic chr17:73051816(+) A-I      intronic chr17:73050297(+) A-I      intronic chr17:73054683(+) A-I      intronic chr17:73052003(+) A-I      intronic chr17:73051279(+) A-I      intronic chr17:73050026(+) A-I      intronic chr17:73051806(+) A-I      intronic chr17:73048447(+) A-I      intronic chr17:73053323(+) A-I      intronic chr17:73053754(+) A-I      intronic chr17:73050328(+) A-I      intronic chr17:73050781(+) A-I      intronic chr17:73053232(+) A-I      intronic chr17:73053758(+) A-I      intronic chr17:73054043(+) A-I      intronic chr17:73051424(+) A-I      intronic chr17:73046522(+) A-I      intronic chr17:73053167(+) A-I      intronic chr17:73053183(+) A-I      intronic chr17:73051243(+) A-I      intronic chr17:73053269(+) A-I      intronic chr17:73047275(+) A-I      intronic chr17:73051372(+) A-I      intronic chr17:73053853(+) A-I      intronic chr17:73053458(+) A-I      intronic chr17:73051612(+) A-I      intronic chr17:73051250(+) A-I      intronic chr17:73048878(+) A-I      intronic chr17:73051211(+) A-I      intronic chr17:73049812(+) A-I      intronic chr17:73051610(+) A-I      intronic chr17:73054325(+) A-I      intronic chr17:73052078(+) A-I      intronic chr17:73051189(+) A-I      intronic chr17:73052105(+) A-I      intronic chr17:73050763(+) A-I      intronic chr17:73049552(+) A-I      intronic chr17:73053238(+) A-I      intronic chr17:73053311(+) A-I      intronic chr17:73051769(+) A-I      intronic chr17:73050343(+) A-I      intronic chr17:73054774(+) A-I      intronic chr17:73048868(+) A-I      intronic chr17:73047545(+) A-I      intronic chr17:73050889(+) A-I      intronic chr17:73053839(+) A-I      intronic chr17:73051267(+) A-I      intronic chr17:73050645(+) A-I      intronic chr17:73052108(+) A-I      intronic chr17:73054734(+) A-I      intronic chr17:73053105(+) A-I      intronic chr17:73048562(+) A-I      intronic chr17:73048521(+) A-I      intronic chr17:73051330(+) A-I      intronic chr17:73053214(+) A-I      intronic chr17:73054277(+) A-I      intronic chr17:73050743(+) A-I      intronic chr17:73052032(+) A-I      intronic chr17:73050206(+) A-I      intronic chr17:73053188(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	KCTD2	chr17:73051211(+) A-G intron -    22484847 chr17:73051243(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	KCTD2	chr17:73036241-73036242(+) m6A exon//intron       27773535 chr17:73036257-73036258(+) m6A exon//intron       27773535 chr17:73036264-73036265(+) m6A exon//intron       27773535 chr17:73036280-73036281(+) m6A exon//intron       27773535 chr17:73036296-73036297(+) m6A exon//intron       27773535 chr17:73036303-73036304(+) m6A exon//intron       27773535 chr17:73036311-73036312(+) m6A exon//intron       27773535 chr17:73036448-73036449(+) m6A exon//intron       24284625 chr17:73036455-73036456(+) m6A exon//intron       24284625 chr17:73036497-73036498(+) m6A exon//intron       24284625 chr17:73036504-73036505(+) m6A exon//intron       24284625 chr17:73036549-73036550(+) m6A exon//intron       24284625//25456834 chr17:73043353-73043354(+) m6A CDS//intron       25456834//24981863 chr17:73043364-73043365(+) m6A CDS//intron       25456834//24981863 chr17:73043524-73043525(+) m6A CDS//intron       24209618 chr17:73043605-73043606(+) m6A CDS//intron       24284625//24209618 chr17:73043661-73043662(+) m6A CDS//intron       24284625//24209618 chr17:73043673-73043674(+) m6A CDS//intron       24284625 chr17:73043679-73043680(+) m6A CDS//intron       24284625 chr17:73044987-73044988(+) m6A exon//intron       24284625 chr17:73045345-73045346(+) m6A 3'UTR//5'UTR//CDS//exon       24284625 chr17:73045391-73045392(+) m6A 3'UTR//5'UTR//CDS//exon       24284625 chr17:73049177-73049178(+) m6A 3'UTR//5'UTR//CDS//exon       24284625 chr17:73049186-73049187(+) m6A 3'UTR//5'UTR//CDS//exon       24284625 chr17:73049191-73049192(+) m6A 3'UTR//5'UTR//CDS//exon       24284625 chr17:73059142-73059143(+) m6A 3'UTR//exon       24284625//22575960 chr17:73059148-73059149(+) m6A 3'UTR//exon       24284625//22575960 chr17:73059157-73059158(+) m6A 3'UTR//exon       24284625//22575960 chr17:73059164-73059165(+) m6A 3'UTR//exon       24284625//22575960 chr17:73059206-73059207(+) m6A 3'UTR//exon       24284625//24209618//24981863//22575960//22608085 chr17:73059269-73059270(+) m1A 3'UTR//exon       26863410 chr17:73059285-73059286(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr17:73059294-73059295(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr17:73059314-73059315(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr17:73059323-73059324(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr17:73059347-73059348(+) Y 3'UTR//exon       26075521 chr17:73059360-73059361(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr17:73059391-73059392(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:73059585-73059586(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:73059838-73059839(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr17:73059880-73059881(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr17:73059906-73059907(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr17:73059925-73059926(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:73059991-73059992(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:73060014-73060015(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr17:73060167-73060168(+) m6A 3'UTR       24284625//24209618 chr17:73060804-73060805(+) m6A 3'UTR       24284625//22608085 chr17:73060922-73060923(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr17:73060949-73060950(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr17:73060995-73060996(+) m6A 3'UTR       25456834//24981863//22608085 chr17:73061108-73061109(+) m6A 3'UTR       24284625//25456834 chr17:73061157-73061158(+) m6A 3'UTR       24284625 chr17:73061233-73061234(+) m6A 3'UTR       24284625//24981863 chr17:73061278-73061279(+) m6A 3'UTR       24284625 chr17:73061376-73061377(+) m6A 3'UTR       24284625 chr17:73061831-73061832(+) m6A 3'UTR       24284625 chr17:73061864-73061865(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	KCTD2	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART5-3p
Interactor2: KCTD2

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg