Detail Information

Basic Information:


  VIRBase ID:  

VHID00411161

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART4-3p:           FAM227A:      

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Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART4-3p FAM227A
miRBase
Accession/Entrez ID		 MIMAT0009204 646851
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR FAM227A
chr22:38995261(-) A-I      intronic
chr22:38995140(-) A-I      intronic
chr22:38995194(-) A-I      intronic
chr22:38995195(-) A-I      intronic
chr22:39027097(-) A-I      intronic
chr22:38993855(-) A-I      intronic
chr22:38993865(-) A-I      intronic
chr22:38993867(-) A-I      intronic
chr22:38994001(-) A-I      intronic
chr22:38995073(-) A-I      intronic
chr22:38995128(-) A-I      intronic
chr22:38995185(-) A-I      intronic
chr22:38986886(-) A-I      intronic
chr22:38982812(-) A-I      intronic
chr22:38982814(-) A-I      intronic
chr22:38982972(-) A-I      intronic
chr22:38986901(-) A-I      intronic
chr22:38986905(-) A-I      intronic
chr22:38986918(-) A-I      intronic
chr22:38986941(-) A-I      intronic
chr22:38996881(-) A-I      intronic
chr22:39000280(-) A-I      intronic
chr22:39001545(-) A-I      intronic
chr22:39003074(-) A-I      intronic
chr22:39011247(-) A-I      intronic
chr22:39011255(-) A-I      intronic
chr22:39013510(-) A-I      intronic
chr22:39013537(-) A-I      intronic
chr22:39013799(-) A-I      intronic
chr22:39013836(-) A-I      intronic
chr22:39029570(-) A-I      intronic
chr22:39036111(-) A-I      intronic
chr22:39036131(-) A-I      intronic
chr22:38982811(-) A-I      intronic
chr22:38980930(-) A-I      3'UTR
chr22:38976074(-) A-I      3'UTR
chr22:38980527(-) A-I      3'UTR
chr22:38980864(-) A-I      3'UTR
chr22:38980590(-) A-I      3'UTR
chr22:38989793(-) A-I      intronic
chr22:39048770(-) A-I      intronic
chr22:38989781(-) A-I      intronic
chr22:38993859(-) A-I      intronic
chr22:38986008(-) A-I      intronic
chr22:39029979(-) A-I      intronic
chr22:39017564(-) A-I      intronic
chr22:39013834(-) A-I      intronic
chr22:38989874(-) A-I      intronic
chr22:39029967(-) A-I      intronic
chr22:39030031(-) A-I      intronic
chr22:39027137(-) A-I      intronic
chr22:38987277(-) A-I      intronic
chr22:38988124(-) A-I      intronic
chr22:38989731(-) A-I      intronic
chr22:38984502(-) A-I      intronic
chr22:39037435(-) A-I      intronic
chr22:39023706(-) A-I      intronic
chr22:38980549(-) A-I      3'UTR
chr22:38978012(-) A-I      3'UTR
chr22:38980552(-) A-I      3'UTR
chr22:38977888(-) A-I      3'UTR
chr22:38980829(-) A-I      3'UTR
chr22:38980522(-) A-I      3'UTR
chr22:38976024(-) A-I      3'UTR
chr22:38976916(-) A-I      3'UTR
chr22:38977832(-) A-I      3'UTR
chr22:38980966(-) A-I      3'UTR
chr22:38980759(-) A-I      3'UTR
chr22:38976197(-) A-I      3'UTR
chr22:38980739(-) A-I      3'UTR
chr22:38977573(-) A-I      3'UTR
chr22:38980996(-) A-I      3'UTR
chr22:38980510(-) A-I      3'UTR
chr22:38980678(-) A-I      3'UTR
chr22:38980721(-) A-I      3'UTR
chr22:38979444(-) A-I      3'UTR
chr22:38980604(-) A-I      3'UTR
chr22:38976023(-) A-I      3'UTR
chr22:38980867(-) A-I      3'UTR
chr22:38980640(-) A-I      3'UTR
chr22:38980645(-) A-I      3'UTR
chr22:38980913(-) A-I      3'UTR
chr22:38981064(-) A-I      3'UTR
chr22:38976058(-) A-I      3'UTR
chr22:38980939(-) A-I      3'UTR
chr22:38981005(-) A-I      3'UTR
chr22:38980526(-) A-I      3'UTR
chr22:38977873(-) A-I      3'UTR
chr22:38975959(-) A-I      3'UTR
chr22:38980686(-) A-I      3'UTR
chr22:38980578(-) A-I      3'UTR
chr22:38976184(-) A-I      3'UTR
chr22:38980869(-) A-I      3'UTR
chr22:38976952(-) A-I      3'UTR
chr22:38980940(-) A-I      3'UTR
chr22:38980651(-) A-I      3'UTR
chr22:38975966(-) A-I      3'UTR
chr22:39037429(-) A-I      intronic
chr22:38988224(-) A-I      intronic
chr22:38988091(-) A-I      intronic
chr22:38989253(-) A-I      intronic
chr22:38989861(-) A-I      intronic
chr22:38989398(-) A-I      intronic
chr22:38989983(-) A-I      intronic
chr22:38989288(-) A-I      intronic
chr22:38988125(-) A-I      intronic
chr22:39000220(-) A-I      intronic
chr22:38988177(-) A-I      intronic
chr22:39029729(-) A-I      intronic
chr22:38987194(-) A-I      intronic
chr22:38987246(-) A-I      intronic
chr22:39029818(-) A-I      intronic
chr22:38986203(-) A-I      intronic
chr22:38988225(-) A-I      intronic
chr22:39041969(-) A-I      intronic
chr22:39022533(-) A-I      intronic
chr22:38987173(-) A-I      intronic
chr22:39030104(-) A-I      intronic
chr22:39037444(-) A-I      intronic
chr22:39013769(-) A-I      intronic
chr22:39000310(-) A-I      intronic
chr22:38988050(-) A-I      intronic
chr22:39023888(-) A-I      intronic
chr22:39023707(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase FAM227A
chr22:38976324-38976325(-) m6A 3'UTR       27773535
chr22:38976387-38976388(-) m6A 3'UTR       27773535
chr22:38978254-38978255(-) m6A 3'UTR//exon       27773535
chr22:38978273-38978274(-) m6A 3'UTR//exon       27773535
chr22:38978621-38978622(-) m6A 3'UTR//intron       22608085
chr22:38978644-38978645(-) m6A 3'UTR//intron       22608085
chr22:38978920-38978921(-) m6A 3'UTR//CDS//exon       27773535
chr22:38978991-38978992(-) m6A 3'UTR//exon//intron       27773535
chr22:38979037-38979038(-) m6A 3'UTR//exon//intron       27773535
chr22:38979103-38979104(-) m6A 3'UTR//intron       27773535
chr22:38981636-38981637(-) m6A 3'UTR//intron       22608085
chr22:38981673-38981674(-) m6A 3'UTR//intron       22608085
chr22:38981718-38981719(-) m6A 3'UTR//intron       22608085
chr22:38982029-38982030(-) m6A 3'UTR//exon//intron       24284625//25456834//27773535//22608085
chr22:38982058-38982059(-) m6A 3'UTR//exon//intron       24284625//25456834//27773535//22608085
chr22:38982110-38982111(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27773535//22608085
chr22:38982159-38982160(-) m6A CDS//exon       24284625//25456834//24981863//22608085
chr22:38982170-38982171(-) m6A CDS//exon       24284625//25456834//24981863//22608085
chr22:38987368-38987369(-) m6A CDS//exon//intron       24284625//25456834//22608085
chr22:38987392-38987393(-) m6A CDS//exon//intron       25456834
chr22:38987398-38987399(-) m6A CDS//exon//intron       25456834
chr22:38987497-38987498(-) m6A CDS//exon       24284625
chr22:38993220-38993221(-) m6A CDS//exon       24284625
chr22:38993263-38993264(-) m6A CDS//exon       24284625//27773535
chr22:38993295-38993296(-) m6A CDS//exon       27773535
chr22:38993323-38993324(-) m6A CDS//exon       27773535
chr22:39052311-39052312(-) m6A 5'UTR//exon       24284625//27371828
chr22:39052342-39052343(-) m6A 5'UTR//exon       24284625
chr22:39052395-39052396(-) m6A 5'UTR//exon       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate FAM227A
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART4-3p
Interactor2: FAM227A

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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