Basic Information:

  VIRBase ID:  

VHID00410309

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART4-3p:  MIMAT0009204          CSRNP1:  NM_001320560     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART4-3p	CSRNP1
miRBase Accession/Entrez ID	MIMAT0009204	64651
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	AXUD1//CSRNP-1//FAM130B//TAIP-3//URAX1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CSRNP1	chr3:39183393-39183394(-) m6A 3'UTR       27773535 chr3:39183655-39183656(-) m6A 3'UTR       26404942 chr3:39183667-39183668(-) m6A 3'UTR       26404942 chr3:39183710-39183711(-) m6A 3'UTR       26404942 chr3:39184111-39184112(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22608085 chr3:39184120-39184121(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085 chr3:39184145-39184146(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085 chr3:39184187-39184188(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085 chr3:39184235-39184236(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085 chr3:39184355-39184356(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//22608085 chr3:39184407-39184408(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//22608085 chr3:39184513-39184514(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr3:39184542-39184543(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr3:39184585-39184586(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085 chr3:39184726-39184727(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr3:39184994-39184995(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr3:39185062-39185063(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr3:39185068-39185069(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr3:39185281-39185282(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr3:39185296-39185297(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr3:39185406-39185407(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22608085 chr3:39185444-39185445(-) m6A CDS       24284625//24981863//26404942//27773535//27371828 chr3:39185485-39185486(-) m6A CDS       24284625//24981863//26404942//27773535//27371828 chr3:39185530-39185531(-) m6A CDS       24284625//27773535//27371828 chr3:39185662-39185663(-) m6A CDS       24284625//27773535//27371828 chr3:39185859-39185860(-) m6A CDS       24284625//27773535 chr3:39188042-39188043(-) m6A CDS       24284625//27773536 chr3:39188129-39188130(-) m6A CDS       24284625//27371828//27773536 chr3:39188197-39188198(-) m6A 5'UTR       24284625//27371828//27773536 chr3:39195029-39195030(-) m6A 5'UTR//intron       24209618//24981863//27371828//27773536 chr3:39196025-39196026(-) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CSRNP1	Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART4-3p
Interactor2: CSRNP1

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg