Detail Information

Basic Information:


  VIRBase ID:  

VHID00410149

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART4-3p:           DHX33:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART4-3p DHX33
miRBase
Accession/Entrez ID		 MIMAT0009204 56919
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - DDX33

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR DHX33
chr17:5354608(-) A-I      intronic
chr17:5354620(-) A-I      intronic
chr17:5365427(-) A-I      intronic
chr17:5365368(-) A-I      intronic
chr17:5359749(-) A-I      intronic
chr17:5359748(-) A-I      intronic
chr17:5359745(-) A-I      intronic
chr17:5359732(-) A-I      intronic
chr17:5359722(-) A-I      intronic
chr17:5359710(-) A-I      intronic
chr17:5354667(-) A-I      intronic
chr17:5354626(-) A-I      intronic
chr17:5354619(-) A-I      intronic
chr17:5354618(-) A-I      intronic
chr17:5365332(-) A-I      intronic
chr17:5351350(-) A-I      intronic
chr17:5365063(-) A-I      intronic
chr17:5364827(-) A-I      intronic
chr17:5364781(-) A-I      intronic
chr17:5364073(-) A-I      intronic
chr17:5354501(-) A-I      intronic
chr17:5364028(-) A-I      intronic
chr17:5362852(-) A-I      intronic
chr17:5362315(-) A-I      intronic
chr17:5365437(-) A-I      intronic
chr17:5362300(-) A-I      intronic
chr17:5362273(-) A-I      intronic
chr17:5354541(-) A-I      intronic
chr17:5354704(-) A-I      intronic
chr17:5359799(-) A-I      intronic
chr17:5360700(-) A-I      intronic
chr17:5360699(-) A-I      intronic
chr17:5360698(-) A-I      intronic
chr17:5360680(-) A-I      intronic
chr17:5365464(-) A-I      intronic
chr17:5365438(-) A-I      intronic
chr17:5350755(-) A-I      intronic
chr17:5363234(-) A-I      intronic
chr17:5364750(-) A-I      intronic
chr17:5348600(-) A-I      intronic
chr17:5350770(-) A-I      intronic
chr17:5355679(-) A-I      intronic
chr17:5354605(-) A-I      intronic
chr17:5360686(-) A-I      intronic
chr17:5362848(-) A-I      intronic
chr17:5355986(-) A-I      intronic
chr17:5356600(-) A-I      intronic
chr17:5362425(-) A-I      intronic
chr17:5360851(-) A-I      intronic
chr17:5365037(-) A-I      intronic
chr17:5365051(-) A-I      intronic
chr17:5364758(-) A-I      intronic
chr17:5364912(-) A-I      intronic
chr17:5365096(-) A-I      intronic
chr17:5361900(-) A-I      intronic
chr17:5364695(-) A-I      intronic
chr17:5363503(-) A-I      intronic
chr17:5362398(-) A-I      intronic
chr17:5354502(-) A-I      intronic
chr17:5364996(-) A-I      intronic
chr17:5355722(-) A-I      intronic
chr17:5354522(-) A-I      intronic
chr17:5365062(-) A-I      intronic
chr17:5354651(-) A-I      intronic
chr17:5354488(-) A-I      intronic
chr17:5364862(-) A-I      intronic
chr17:5364881(-) A-I      intronic
chr17:5365160(-) A-I      intronic
chr17:5365398(-) A-I      intronic
chr17:5349435(-) A-I      intronic
chr17:5362346(-) A-I      intronic
chr17:5356647(-) A-I      intronic
chr17:5354698(-) A-I      intronic
chr17:5349496(-) A-I      intronic
chr17:5355736(-) A-I      intronic
chr17:5349433(-) A-I      intronic
chr17:5354537(-) A-I      intronic
chr17:5363955(-) A-I      intronic
chr17:5362352(-) A-I      intronic
chr17:5364100(-) A-I      intronic
chr17:5355696(-) A-I      intronic
chr17:5365073(-) A-I      intronic
chr17:5363005(-) A-I      intronic
chr17:5365042(-) A-I      intronic
chr17:5366290(-) A-I      intronic
chr17:5364844(-) A-I      intronic
chr17:5354590(-) A-I      intronic
chr17:5365072(-) A-I      intronic
chr17:5356649(-) A-I      intronic
chr17:5348569(-) A-I      intronic
chr17:5362438(-) A-I      intronic
chr17:5364993(-) A-I      intronic
chr17:5364790(-) A-I      intronic
chr17:5351387(-) A-I      intronic
chr17:5365439(-) A-I      intronic
chr17:5356601(-) A-I      intronic
chr17:5365463(-) A-I      intronic
chr17:5365397(-) A-I      intronic
chr17:5362396(-) A-I      intronic
chr17:5366280(-) A-I      intronic
chr17:5362401(-) A-I      intronic
chr17:5364817(-) A-I      intronic
chr17:5363942(-) A-I      intronic
chr17:5363213(-) A-I      intronic
chr17:5360582(-) A-I      intronic
chr17:5363902(-) A-I      intronic
chr17:5362283(-) A-I      intronic
chr17:5364886(-) A-I      intronic
chr17:5365430(-) A-I      intronic
chr17:5351442(-) A-I      intronic
chr17:5354456(-) A-I      intronic
chr17:5364772(-) A-I      intronic
chr17:5348404(-) A-I      intronic
chr17:5364839(-) A-I      intronic
chr17:5345320(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED DHX33
chr17:5354537(-) A-G intron -    22484847
chr17:5364677(-) A-G intron -    22484847
chr17:5364817(-) A-G intron -    22484847
chr17:5364844(-) A-G intron -    22484847
chr17:5364881(-) A-G intron -    22484847
chr17:5365062(-) A-G intron -    22484847
chr17:5365073(-) A-G intron -    22484847
chr17:5365397(-) A-G intron -    22484847
chr17:5365398(-) A-G intron -    22484847
chr17:5365439(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase DHX33
chr17:5345163-5345164(-) m6A 3'UTR       24981863
chr17:5345198-5345199(-) m6A 3'UTR       24981863
chr17:5345310-5345311(-) m6A 3'UTR       24981863//27773535
chr17:5345382-5345383(-) m6A 3'UTR       24981863
chr17:5346630-5346631(-) m6A 3'UTR       -
chr17:5346711-5346712(-) m6A 3'UTR       -
chr17:5346834-5346835(-) m6A 3'UTR//exon       22575960//22608085
chr17:5346862-5346863(-) m6A 3'UTR//exon       24284625//22575960//22608085
chr17:5346954-5346955(-) m6A 3'UTR//exon       24284625//24981863//22575960//22608085
chr17:5346959-5346960(-) m6A 3'UTR//exon       24284625//24209618//24981863//22575960//22608085
chr17:5347170-5347171(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr17:5347325-5347326(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:5347346-5347347(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:5347352-5347353(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr17:5347361-5347362(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr17:5347366-5347367(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr17:5347478-5347479(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr17:5347528-5347529(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr17:5347538-5347539(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr17:5347606-5347607(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr17:5347714-5347715(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:5352141-5352142(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535
chr17:5357218-5357219(-) m6A 3'UTR//CDS//exon       24284625
chr17:5359422-5359423(-) m6A 3'UTR//CDS//exon       22575960
chr17:5359482-5359483(-) m6A 3'UTR//CDS//exon       22575960
chr17:5364486-5364487(-) m6A exon//intron       24981863//22608085
chr17:5364540-5364541(-) m6A exon//intron       24981863//22608085
chr17:5364648-5364649(-) m6A exon//intron       24284625//24981863
chr17:5365650-5365651(-) m6A 3'UTR//CDS//intron       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr17:5365659-5365660(-) m6A 3'UTR//CDS//intron       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr17:5365718-5365719(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr17:5365771-5365772(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr17:5365825-5365826(-) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr17:5366860-5366861(-) m6A CDS//intron       24284625//24981863//22608085
chr17:5366865-5366866(-) m6A CDS//intron       24284625//24981863//22608085
chr17:5366988-5366989(-) m6A CDS//intron       27773536
chr17:5367003-5367004(-) m6A CDS//intron       27773536
chr17:5371907-5371908(-) m6A CDS       24284625//27773536
chr17:5371913-5371914(-) m6A CDS       24284625//27773536
chr17:5372125-5372126(-) m6A CDS       24284625//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate DHX33
Chromatin K562 cells     -
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART4-3p
Interactor2: DHX33

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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