Basic Information:

  VIRBase ID:  

VHID00410022

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART4-3p:  MIMAT0009204          TMEM38B:  NM_018112     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART4-3p	TMEM38B
miRBase Accession/Entrez ID	MIMAT0009204	55151
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	bA219P18.1//C9orf87//D4Ertd89e//OI14//TRIC-B//TRICB

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TMEM38B	chr9:108486191(+) A-I      intronic chr9:108473466(+) A-I      intronic chr9:108473467(+) A-I      intronic chr9:108486784(+) A-I      intronic chr9:108474030(+) A-I      intronic chr9:108466987(+) A-I      intronic chr9:108485606(+) A-I      intronic chr9:108474337(+) A-I      intronic chr9:108502713(+) A-I      intronic chr9:108486810(+) A-I      intronic chr9:108474302(+) A-I      intronic chr9:108468608(+) A-I      intronic chr9:108486781(+) A-I      intronic chr9:108469184(+) A-I      intronic chr9:108473949(+) A-I      intronic chr9:108473959(+) A-I      intronic chr9:108486661(+) A-I      intronic chr9:108467133(+) A-I      intronic chr9:108474016(+) A-I      intronic chr9:108474021(+) A-I      intronic chr9:108486660(+) A-I      intronic chr9:108486727(+) A-I      intronic chr9:108486758(+) A-I      intronic chr9:108474022(+) A-I      intronic chr9:108473453(+) A-I      intronic chr9:108486783(+) A-I      intronic chr9:108474299(+) A-I      intronic chr9:108474336(+) A-I      intronic chr9:108474393(+) A-I      intronic chr9:108473863(+) A-I      intronic chr9:108486739(+) A-I      intronic chr9:108467046(+) A-I      intronic chr9:108469311(+) A-I      intronic chr9:108469197(+) A-I      intronic chr9:108473980(+) A-I      intronic chr9:108474457(+) A-I      intronic chr9:108473954(+) A-I      intronic chr9:108473601(+) A-I      intronic chr9:108486777(+) A-I      intronic chr9:108473930(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TMEM38B	chr9:108472551(+) A-I intron -    22327324 chr9:108521143(+) A-I intron -    22327324 chr9:108473453(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TMEM38B	chr9:108484869-108484870(+) m6A CDS       26404942 chr9:108522667-108522668(+) m6A intron       22608085 chr9:108522681-108522682(+) m6A intron       22608085 chr9:108522705-108522706(+) m6A intron       22608085 chr9:108522729-108522730(+) m6A intron       22608085 chr9:108522782-108522783(+) m6A intron       22608085 chr9:108522828-108522829(+) m6A intron       22608085 chr9:108522851-108522852(+) m6A intron       22608085 chr9:108522885-108522886(+) m6A intron       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TMEM38B	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART4-3p
Interactor2: TMEM38B

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg