Basic Information:

  VIRBase ID:  

VHID00409973

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART4-3p:  MIMAT0009204          APTX:  NR_160926     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART4-3p	APTX
miRBase Accession/Entrez ID	MIMAT0009204	54840
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	AOA//AOA1//AXA1//EAOH//EOAHA//FHA-HIT

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	APTX	chr9:32991092(-) A-I      intronic chr9:32991099(-) A-I      intronic chr9:32991188(-) A-I      intronic chr9:32991191(-) A-I      intronic chr9:32993784(-) A-I      intronic chr9:32993884(-) A-I      intronic chr9:32995774(-) A-I      intronic chr9:32999729(-) A-I      intronic chr9:32991693(-) A-I      intronic chr9:32995767(-) A-I      intronic chr9:32991739(-) A-I      intronic chr9:32991100(-) A-I      intronic chr9:32991692(-) A-I      intronic chr9:32982937(-) A-I      intronic chr9:32993894(-) A-I      intronic chr9:32991101(-) A-I      intronic chr9:33001112(-) A-I      intronic chr9:32995718(-) A-I      intronic chr9:32983040(-) A-I      intronic chr9:32983045(-) A-I      intronic chr9:32990308(-) A-I      intronic chr9:32990344(-) A-I      intronic chr9:32990346(-) A-I      intronic chr9:32991102(-) A-I      intronic chr9:33001018(-) A-I      intronic chr9:33001023(-) A-I      intronic chr9:33001038(-) A-I      intronic chr9:33001039(-) A-I      intronic chr9:33000857(-) A-I      intronic chr9:33000459(-) A-I      intronic chr9:32995641(-) A-I      intronic chr9:32995696(-) A-I      intronic chr9:33000422(-) A-I      intronic chr9:32993921(-) A-I      intronic chr9:32996435(-) A-I      intronic chr9:32996406(-) A-I      intronic chr9:32995839(-) A-I      intronic chr9:32999715(-) A-I      intronic chr9:32990365(-) A-I      intronic chr9:32990398(-) A-I      intronic chr9:32991053(-) A-I      intronic chr9:32991063(-) A-I      intronic chr9:32995762(-) A-I      intronic chr9:32999784(-) A-I      intronic chr9:32996361(-) A-I      intronic chr9:33000911(-) A-I      intronic chr9:32986912(-) A-I      intronic chr9:33001006(-) A-I      intronic chr9:33000504(-) A-I      intronic chr9:32991062(-) A-I      intronic chr9:32993789(-) A-I      intronic chr9:32991010(-) A-I      intronic chr9:32985584(-) A-I      intronic chr9:32996365(-) A-I      intronic chr9:32991689(-) A-I      intronic chr9:32999901(-) A-I      intronic chr9:32997244(-) A-I      5'UTR chr9:32997308(-) A-I      5'UTR chr9:32997290(-) A-I      5'UTR chr9:32996479(-) A-I      intronic chr9:32993910(-) A-I      intronic chr9:32996522(-) A-I      intronic chr9:32991196(-) A-I      intronic chr9:32991614(-) A-I      intronic chr9:32999911(-) A-I      intronic chr9:32996498(-) A-I      intronic chr9:33000984(-) A-I      intronic chr9:32993854(-) A-I      intronic chr9:32999717(-) A-I      intronic chr9:32999975(-) A-I      intronic chr9:32996474(-) A-I      intronic chr9:33001118(-) A-I      intronic chr9:32977437(-) A-I      intronic chr9:32999858(-) A-I      intronic chr9:33000983(-) A-I      intronic chr9:32977319(-) A-I      intronic chr9:32999753(-) A-I      intronic chr9:32991525(-) A-I      intronic chr9:32995823(-) A-I      intronic chr9:32999825(-) A-I      intronic chr9:32999852(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	APTX	chr9:32988786(-) A-I intron -    22327324 chr9:32981574(-) A-I intron -    21960545 chr9:32981532(-) A-G intron -    22484847 chr9:32993854(-) A-G intron -    22484847 chr9:32993910(-) A-G intron -    22484847 chr9:32997290(-) A-G exon 5'UTR    22484847 chr9:32999852(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	APTX	chr9:32973392-32973393(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr9:32973417-32973418(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr9:32973448-32973449(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr9:32973503-32973504(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085 chr9:32973522-32973523(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085 chr9:32973607-32973608(-) Gm 3'UTR//CDS       - chr9:32980057-32980058(-) m6A intron       22608085 chr9:32980139-32980140(-) m6A intron       22608085 chr9:32980161-32980162(-) m6A intron       27773535//22608085 chr9:32987607-32987608(-) m6A 3'UTR//CDS//exon//intron       24981863//28052920//27773535//27371828 chr9:32987618-32987619(-) m6A 3'UTR//CDS//exon//intron       24981863//28052920//27773535//27371828 chr9:32987693-32987694(-) m6A 3'UTR//CDS//exon//intron       24209618//24981863//28052920//27773535//27371828 chr9:32987707-32987708(-) m6A 3'UTR//CDS//exon//intron       24209618//24981863//28052920//27773535//27371828 chr9:32987748-32987749(-) m6A 3'UTR//CDS//exon//intron       24209618//24981863//27773535 chr9:32987797-32987798(-) m6A 3'UTR//CDS//exon//intron       24209618//24981863//27773535 chr9:32989792-32989793(-) m6A CDS//exon       24209618//24981863//27773535 chr9:32989835-32989836(-) m6A CDS//exon       24209618//24981863//27773535 chr9:32989857-32989858(-) m6A CDS//exon       24209618//24981863//27773535 chr9:32989862-32989863(-) m6A CDS//exon       24209618//24981863//27773535 chr9:32989944-32989945(-) m6A 5'UTR//intron       24981863 chr9:33020047-33020048(-) m6A exon//intron       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	APTX	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART4-3p
Interactor2: APTX

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg