Basic Information:

  VIRBase ID:  

VHID00409613

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART4-3p:  MIMAT0009204          CLUH:  NM_001366661     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART4-3p	CLUH
miRBase Accession/Entrez ID	MIMAT0009204	23277
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CLU1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CLUH	chr17:2603039(-) A-I      intronic chr17:2603153(-) A-I      intronic chr17:2602121(-) A-I      intronic chr17:2602133(-) A-I      intronic chr17:2602158(-) A-I      intronic chr17:2602279(-) A-I      intronic chr17:2602759(-) A-I      intronic chr17:2603127(-) A-I      intronic chr17:2602181(-) A-I      intronic chr17:2602153(-) A-I      intronic chr17:2602894(-) A-I      intronic chr17:2602258(-) A-I      intronic chr17:2603064(-) A-I      intronic chr17:2602175(-) A-I      intronic chr17:2602259(-) A-I      intronic chr17:2602219(-) A-I      intronic chr17:2602338(-) A-I      intronic chr17:2602839(-) A-I      intronic chr17:2603196(-) A-I      intronic chr17:2602718(-) A-I      intronic chr17:2602800(-) A-I      intronic chr17:2603210(-) A-I      intronic chr17:2602241(-) A-I      intronic chr17:2602992(-) A-I      intronic chr17:2602838(-) A-I      intronic chr17:2602172(-) A-I      intronic chr17:2602708(-) A-I      intronic chr17:2602991(-) A-I      intronic chr17:2602799(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CLUH	chr17:2592732-2592733(-) m6A 3'UTR       27773535 chr17:2592750-2592751(-) m6A 3'UTR       24284625//27773535 chr17:2592814-2592815(-) m6A 3'UTR       24284625//27773535//22575960 chr17:2592878-2592879(-) m6A 3'UTR       24284625//27773535//22575960 chr17:2592993-2592994(-) m6A 3'UTR       24284625//22575960 chr17:2593381-2593382(-) m6A 3'UTR       24284625//24209618 chr17:2593665-2593666(-) m6A 3'UTR       24284625//22575960 chr17:2593691-2593692(-) Y 3'UTR       26075521 chr17:2593870-2593871(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27371828//27773536//22575960//22608085 chr17:2593912-2593913(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27371828//27773536//22575960//22608085 chr17:2593942-2593943(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr17:2594002-2594003(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr17:2594062-2594063(-) m6A CDS       24284625//24981863//27773535//27371828//22575960//22608085 chr17:2595167-2595168(-) m6A CDS//exon       24284625//27773535//22575960 chr17:2595178-2595179(-) m6A CDS//exon       24284625//27773535//22575960 chr17:2595889-2595890(-) m6A CDS//exon       24284625//22575960 chr17:2597252-2597253(-) m6A CDS//exon       24284625//22575960 chr17:2597290-2597291(-) m6A CDS//exon       22575960 chr17:2598261-2598262(-) m6A CDS//exon       24284625//22575960 chr17:2598324-2598325(-) m6A CDS//exon       24284625//27773535 chr17:2598348-2598349(-) m6A CDS//exon       24284625//27773535 chr17:2598556-2598557(-) m6A CDS//exon       22575960 chr17:2598677-2598678(-) m6A CDS//exon//intron       22575960 chr17:2598812-2598813(-) m6A CDS//exon//intron       27773536//22575960 chr17:2598877-2598878(-) m6A exon//intron       27773536 chr17:2599369-2599370(-) m6A exon//intron       25456834//24981863 chr17:2599513-2599514(-) m6A CDS//exon       27773536 chr17:2599828-2599829(-) m6A CDS       24284625//27371828//27773536//22575960 chr17:2600036-2600037(-) m6A CDS       24284625//27371828//27773536//22575960 chr17:2600106-2600107(-) m6A CDS       24981863//27371828//22575960 chr17:2600171-2600172(-) m6A CDS       - chr17:2601318-2601319(-) m6A CDS       24284625//27773536 chr17:2601508-2601509(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960 chr17:2601552-2601553(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960 chr17:2601723-2601724(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27371828//22575960//22608085 chr17:2601735-2601736(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27371828//22575960 chr17:2601771-2601772(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27371828//27773536//22575960 chr17:2601796-2601797(-) m6A CDS       24284625//24209618//24981863//26404942//27371828//27773536//22575960 chr17:2603715-2603716(-) m6A CDS       24284625//27773535//27371828//27773536//22575960 chr17:2603760-2603761(-) m6A CDS       24284625//27773535//27371828//27773536//22575960 chr17:2603974-2603975(-) m6A CDS       24284625//27773535//27371828//27773536//22575960 chr17:2604063-2604064(-) m6A CDS       24284625//27773535//27371828//22575960 chr17:2604457-2604458(-) m6A CDS//exon       24284625//27773535//22575960 chr17:2604707-2604708(-) m6A CDS//exon       24284625//27773535//22575960 chr17:2604740-2604741(-) m6A CDS//exon       24284625//27773535//22575960 chr17:2604758-2604759(-) m6A CDS       24284625//27773535//22575960 chr17:2604773-2604774(-) m6A CDS       24284625//22575960 chr17:2604919-2604920(-) m6A CDS       24284625//22575960 chr17:2604997-2604998(-) m6A CDS       24284625//27773535//27773536//22575960 chr17:2605284-2605285(-) m6A CDS       24284625//27773536//22575960 chr17:2605302-2605303(-) m6A CDS       24284625//27773536//22575960 chr17:2606676-2606677(-) m6A CDS       24284625//27773536//22575960 chr17:2606727-2606728(-) m6A CDS       24284625//27773536//22575960 chr17:2606736-2606737(-) m6A CDS       24284625//27773536//22575960 chr17:2607710-2607711(-) m6A CDS       24284625//27773536 chr17:2607741-2607742(-) m6A CDS       24284625//27371828//27773536//22575960 chr17:2607807-2607808(-) m1A CDS       26863410//26863196 chr17:2607827-2607828(-) m6A CDS       27371828//27773536 chr17:2614898-2614899(-) m6A 5'UTR//CDS//intron       24209618//24981863//22575960 chr17:2614985-2614986(-) m6A 5'UTR//intron       24209618//24981863//27371828//22575960 chr17:2615659-2615660(-) m6A 5'UTR       24284625//25456834//22608085 chr17:2615723-2615724(-) m6A 5'UTR       24284625//25456834//24981863//22608085 chr17:2615837-2615838(-) m6A 5'UTR       24284625//25456834//24981863//22608085 chr17:2615881-2615882(-) m6A 5'UTR       24284625//24209618//25456834//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CLUH	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleus Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART4-3p
Interactor2: CLUH

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg