Basic Information:

  VIRBase ID:  

VHID00409279

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART4-3p:  MIMAT0009204          SOCS5:  NM_144949     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART4-3p	SOCS5
miRBase Accession/Entrez ID	MIMAT0009204	9655
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CIS6//Cish5//CISH6//SOCS-5

RNA Editing:

Resource	Symbol	Editing Position
Lncediting	SOCS5	chr2: 47005147     chr2: 47005111     chr2: 47005091     chr2: 47005101     chr2: 47005102     chr2: 47004960     chr2: 47005068

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SOCS5	chr2:46957624(+) A-I      intronic chr2:46957578(+) A-I      intronic chr2:46957619(+) A-I      intronic chr2:46957580(+) A-I      intronic chr2:46960629(+) A-I      intronic chr2:46960627(+) A-I      intronic chr2:46957628(+) A-I      intronic chr2:46957575(+) A-I      intronic chr2:46942431(+) A-I      intronic chr2:46969844(+) A-I      intronic chr2:46969830(+) A-I      intronic chr2:46940352(+) A-I      intronic chr2:46939612(+) A-I      intronic chr2:46973696(+) A-I      intronic chr2:46973716(+) A-I      intronic chr2:46940415(+) A-I      intronic chr2:46960591(+) A-I      intronic chr2:46957596(+) A-I      intronic chr2:46960721(+) A-I      intronic chr2:46957466(+) A-I      intronic chr2:46957462(+) A-I      intronic chr2:46955812(+) A-I      intronic chr2:46942532(+) A-I      intronic chr2:46943827(+) A-I      intronic chr2:46943818(+) A-I      intronic chr2:46943746(+) A-I      intronic chr2:46973643(+) A-I      intronic chr2:46973669(+) A-I      intronic chr2:46955796(+) A-I      intronic chr2:46955794(+) A-I      intronic chr2:46969905(+) A-I      intronic chr2:46960637(+) A-I      intronic chr2:46969898(+) A-I      intronic chr2:46955722(+) A-I      intronic chr2:46984885(+) A-I      intronic chr2:46968517(+) A-I      intronic chr2:46975578(+) A-I      intronic chr2:46968459(+) A-I      intronic chr2:46984859(+) A-I      intronic chr2:46943832(+) A-I      intronic chr2:46939583(+) A-I      intronic chr2:46940313(+) A-I      intronic chr2:46943850(+) A-I      intronic chr2:46957688(+) A-I      intronic chr2:46940311(+) A-I      intronic chr2:46971326(+) A-I      intronic chr2:46940258(+) A-I      intronic chr2:46942399(+) A-I      intronic chr2:46955943(+) A-I      intronic chr2:46960615(+) A-I      intronic chr2:46943734(+) A-I      intronic chr2:46943807(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SOCS5	chr2:46939583(+) A-G intron -    22484847 chr2:46940311(+) A-G intron -    22484847 chr2:46940313(+) A-G intron -    22484847 chr2:46971289(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SOCS5	chr2:46926362-46926363(+) m1A 5'UTR//intron       26863196//26863410 chr2:46926501-46926502(+) m6A 5'UTR//intron       24209618 chr2:46985760-46985761(+) m6A CDS       24284625//24209618//24981863//22608085 chr2:46985766-46985767(+) m6A CDS       24284625//24209618//24981863//22608085 chr2:46985799-46985800(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr2:46985814-46985815(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr2:46985984-46985985(+) m6A CDS       24284625//25456834//24981863//22608085 chr2:46985989-46985990(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:46986043-46986044(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:46986062-46986063(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:46986101-46986102(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:46986112-46986113(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:46986162-46986163(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:46986179-46986180(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:46986202-46986203(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:46986245-46986246(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:46986370-46986371(+) m6A CDS       24284625//24981863//22608085 chr2:46986562-46986563(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:46986568-46986569(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:46986606-46986607(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr2:46986705-46986706(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:46986727-46986728(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:46986828-46986829(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:46986862-46986863(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:46986888-46986889(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:46986903-46986904(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr2:46987030-46987031(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr2:46987039-46987040(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr2:46987075-46987076(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr2:46987103-46987104(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr2:46987228-46987229(+) m6A CDS       24284625//24981863//22608085 chr2:46987261-46987262(+) m6A CDS       24981863 chr2:46989432-46989433(+) m6A 3'UTR       24981863 chr2:46989476-46989477(+) m6A 3'UTR       24981863 chr2:46989513-46989514(+) m6A 3'UTR       24981863 chr2:46989520-46989521(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SOCS5	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART4-3p
Interactor2: SOCS5

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg