Detail Information

Basic Information:


  VIRBase ID:  

VHID00408915

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART4-3p:           SEC13:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART4-3p SEC13
miRBase
Accession/Entrez ID		 MIMAT0009204 6396
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - D3S1231E//npp-20//SEC13L1//SEC13R

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SEC13
chr3:10349350(-) A-I      intronic
chr3:10348505(-) A-I      intronic
chr3:10348395(-) A-I      intronic
chr3:10352082(-) A-I      intronic
chr3:10348316(-) A-I      intronic
chr3:10348607(-) A-I      intronic
chr3:10351972(-) A-I      intronic
chr3:10349288(-) A-I      intronic
chr3:10349291(-) A-I      intronic
chr3:10352089(-) A-I      intronic
chr3:10348339(-) A-I      intronic
chr3:10349306(-) A-I      intronic
chr3:10349316(-) A-I      intronic
chr3:10349318(-) A-I      intronic
chr3:10349323(-) A-I      intronic
chr3:10352007(-) A-I      intronic
chr3:10352003(-) A-I      intronic
chr3:10348479(-) A-I      intronic
chr3:10348511(-) A-I      intronic
chr3:10348516(-) A-I      intronic
chr3:10348528(-) A-I      intronic
chr3:10348530(-) A-I      intronic
chr3:10352009(-) A-I      intronic
chr3:10342735(-) A-I      3'UTR
chr3:10348995(-) A-I      intronic
chr3:10348998(-) A-I      intronic
chr3:10349057(-) A-I      intronic
chr3:10349075(-) A-I      intronic
chr3:10350853(-) A-I      intronic
chr3:10350872(-) A-I      intronic
chr3:10350910(-) A-I      intronic
chr3:10350886(-) A-I      intronic
chr3:10352026(-) A-I      intronic
chr3:10352099(-) A-I      intronic
chr3:10351971(-) A-I      intronic
chr3:10352075(-) A-I      intronic
chr3:10352173(-) A-I      intronic
chr3:10352053(-) A-I      intronic
chr3:10350718(-) A-I      intronic
chr3:10350705(-) A-I      intronic
chr3:10337265(-) A-I      intronic
chr3:10349071(-) A-I      intronic
chr3:10352063(-) A-I      intronic
chr3:10349548(-) A-I      intronic
chr3:10351970(-) A-I      intronic
chr3:10352088(-) A-I      intronic
chr3:10351957(-) A-I      intronic
chr3:10352131(-) A-I      intronic
chr3:10350750(-) A-I      intronic
chr3:10337264(-) A-I      intronic
chr3:10352167(-) A-I      intronic
chr3:10338666(-) A-I      intronic
chr3:10351958(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SEC13
chr3:10348354(-) A-I intron -    22327324
chr3:10348411(-) A-I intron -    22327324
chr3:10348421(-) A-I intron -    22327324
chr3:10348504(-) A-I intron -    21960545   //22327324
chr3:10348535(-) A-I intron -    22327324
chr3:10348536(-) A-I intron -    22327324
chr3:10349125(-) A-I intron -    22327324
chr3:10349194(-) A-I intron -    22327324
chr3:10349199(-) A-I intron -    22327324
chr3:10350707(-) A-I intron -    22327324
chr3:10348501(-) A-I intron -    21960545
chr3:10348321(-) A-G intron -    22484847
chr3:10348411(-) A-G intron -    22484847
chr3:10348532(-) T-C intron -    22484847
chr3:10348596(-) A-G intron -    22484847
chr3:10348597(-) A-G intron -    22484847
chr3:10348601(-) A-G intron -    22484847
chr3:10349194(-) A-G intron -    22484847
chr3:10349199(-) T-C intron -    22484847
chr3:10349226(-) T-C intron -    22484847
chr3:10349317(-) T-C intron -    22484847
chr3:10349324(-) T-C intron -    22484847
chr3:10349328(-) T-C intron -    22484847
chr3:10349392(-) T-C intron -    22484847
chr3:10348996(-) C-T intron -    22484847
chr3:10350707(-) A-G intron -    22484847
chr3:10350732(-) A-G intron -    22484847
chr3:10350750(-) A-G intron -    22484847
chr3:10351957(-) A-G intron -    22484847
chr3:10351958(-) A-G intron -    22484847
chr3:10351970(-) A-G intron -    22484847
chr3:10351980(-) T-C intron -    22484847
chr3:10352026(-) A-G intron -    22484847
chr3:10352027(-) A-G intron -    22484847
chr3:10352053(-) A-G intron -    22484847
chr3:10352054(-) T-C intron -    22484847
chr3:10352055(-) T-C intron -    22484847
chr3:10352075(-) A-G intron -    22484847
chr3:10352077(-) T-C intron -    22484847
chr3:10352088(-) A-G intron -    22484847
chr3:10352095(-) T-C intron -    22484847
chr3:10352099(-) A-G intron -    22484847
chr3:10352131(-) A-G intron -    22484847
chr3:10352173(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SEC13
chr3:10334895-10334896(-) m6A exon       22608085
chr3:10335004-10335005(-) m6A exon       27773535
chr3:10342639-10342640(-) m6A 3'UTR//exon//intron       27773535
chr3:10342726-10342727(-) m6A 3'UTR//exon//intron       27773535
chr3:10342874-10342875(-) m6A 3'UTR//exon//intron       24981863//26404942//27773535//27371828//27773536//22608085
chr3:10342902-10342903(-) m6A 3'UTR//exon//intron       24981863//26404942//27773535//27371828//27773536//22608085
chr3:10342939-10342940(-) m6A 3'UTR//exon//intron       24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr3:10345295-10345296(-) m6A exon//intron       27773535//27773536
chr3:10345591-10345592(-) m6A exon//intron       -
chr3:10346963-10346964(-) m6A exon//intron       27773535
chr3:10347301-10347302(-) m6A CDS//exon       26404942
chr3:10347320-10347321(-) m6A CDS//exon       26404942
chr3:10353778-10353779(-) m6A CDS//exon       27773535
chr3:10354275-10354276(-) m6A CDS//exon       27773535
chr3:10354592-10354593(-) m6A exon//intron       22608085
chr3:10354664-10354665(-) m6A exon//intron       25456834//27773535//22608085
chr3:10354711-10354712(-) m6A exon//intron       24209618//25456834//27773535//22608085
chr3:10354724-10354725(-) m6A exon//intron       24209618//25456834//27773535//22608085
chr3:10354747-10354748(-) m6A exon//intron       24209618//25456834//27773535//22608085
chr3:10354754-10354755(-) m6A exon//intron       24209618//25456834//27773535//22608085
chr3:10354770-10354771(-) m6A exon//intron       24209618//27773535//22608085
chr3:10354843-10354844(-) m6A exon//intron       24284625//24209618//27773535//22608085
chr3:10354856-10354857(-) m6A exon//intron       24284625//24209618//27773535//22608085
chr3:10354879-10354880(-) m6A exon//intron       27773535
chr3:10354892-10354893(-) m6A exon//intron       27773535
chr3:10357067-10357068(-) m6A CDS//exon       22575960
chr3:10357103-10357104(-) m6A CDS//exon       22575960
chr3:10359740-10359741(-) m6A 5'UTR//CDS//exon       -
chr3:10362217-10362218(-) m6A 5'UTR//intron       24284625
chr3:10362273-10362274(-) m6A 5'UTR//intron       24284625//24981863
chr3:10362341-10362342(-) m6A 5'UTR//intron       24284625//24981863
chr3:10362449-10362450(-) m6A 5'UTR//intron       24284625
chr3:10362461-10362462(-) m6A 5'UTR//intron       24284625
chr3:10362760-10362761(-) m6A 5'UTR//exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SEC13
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART4-3p
Interactor2: SEC13

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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