Basic Information:

  VIRBase ID:  

VHID00408887

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART4-3p:  MIMAT0009204          RPL13:  NM_000977     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART4-3p	RPL13
miRBase Accession/Entrez ID	MIMAT0009204	6137
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BBC1//D16S444E//D16S44E//L13//SEMDIST

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RPL13	chr16:89630462(+) A-I      3'UTR chr16:89630016(+) A-I      3'UTR chr16:89630037(+) A-I      3'UTR chr16:89630073(+) A-I      3'UTR chr16:89630863(+) A-I      3'UTR chr16:89629906(+) A-I      3'UTR chr16:89630854(+) A-I      3'UTR chr16:89630036(+) A-I      3'UTR chr16:89630026(+) A-I      3'UTR chr16:89630000(+) A-I      3'UTR chr16:89630087(+) A-I      3'UTR chr16:89629935(+) A-I      3'UTR chr16:89629998(+) A-I      3'UTR chr16:89629907(+) A-I      3'UTR chr16:89630376(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RPL13	chr16:89629906(+) A-I intron -    22327324

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RPL13	chr16:89627129-89627130(+) m6A 5'UTR//exon//intron       22575960 chr16:89627218-89627219(+) m6A 5'UTR//exon//intron       22575960 chr16:89627416-89627417(+) m6A CDS//exon//intron       26404942//27773536//22575960 chr16:89627903-89627904(+) Cm exon//intron       - chr16:89628015-89628016(+) m6A 5'UTR//CDS//exon//intron       22575960 chr16:89628049-89628050(+) m6A 5'UTR//CDS//exon//intron       22575960 chr16:89628107-89628108(+) m6A 3'UTR//5'UTR//CDS//exon//intron       22575960 chr16:89628151-89628152(+) m6A 3'UTR//5'UTR//CDS//exon       22575960 chr16:89628197-89628198(+) m6A exon//intron       22575960 chr16:89628750-89628751(+) m6A 3'UTR//5'UTR//CDS//exon       27773535//22575960 chr16:89628756-89628757(+) m6A 3'UTR//5'UTR//CDS//exon       27773535//22575960 chr16:89628777-89628778(+) m6A 3'UTR//5'UTR//CDS//exon       27773535//22575960 chr16:89628807-89628808(+) m6A CDS//exon//intron       27773535//22575960 chr16:89628849-89628850(+) m6A CDS//exon//intron       27773535//22575960 chr16:89629387-89629388(+) Y 3'UTR//CDS//exon       26075521 chr16:89629425-89629426(+) m6A 3'UTR//CDS//exon       24209618//25456834//24981863//27773535//22575960//22608085 chr16:89629463-89629464(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr16:89629517-89629518(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr16:89629589-89629590(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr16:89629709-89629710(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr16:89629797-89629798(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr16:89629820-89629821(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RPL13	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART4-3p
Interactor2: RPL13

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg