Detail Information

Basic Information:


  VIRBase ID:  

VHID00408762

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART4-3p:           CHMP1A:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART4-3p CHMP1A
miRBase
Accession/Entrez ID		 MIMAT0009204 5119
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - CHMP1//PCH8//PCOLN3//PRSM1//VPS46-1//VPS46A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CHMP1A
chr16:89719912(-) A-I      intronic
chr16:89722171(-) A-I      intronic
chr16:89722198(-) A-I      intronic
chr16:89712013(-) A-I      3'UTR
chr16:89719564(-) A-I      intronic
chr16:89719574(-) A-I      intronic
chr16:89717732(-) A-I      intronic
chr16:89719494(-) A-I      intronic
chr16:89719498(-) A-I      intronic
chr16:89719570(-) A-I      intronic
chr16:89719609(-) A-I      intronic
chr16:89719887(-) A-I      intronic
chr16:89719974(-) A-I      intronic
chr16:89722101(-) A-I      intronic
chr16:89722102(-) A-I      intronic
chr16:89722140(-) A-I      intronic
chr16:89722147(-) A-I      intronic
chr16:89722165(-) A-I      intronic
chr16:89722172(-) A-I      intronic
chr16:89722300(-) A-I      intronic
chr16:89717722(-) A-I      intronic
chr16:89717620(-) A-I      intronic
chr16:89716741(-) A-I      intronic
chr16:89716724(-) A-I      intronic
chr16:89716620(-) A-I      intronic
chr16:89716189(-) A-I      intronic
chr16:89716148(-) A-I      intronic
chr16:89716095(-) A-I      intronic
chr16:89717775(-) A-I      intronic
chr16:89717523(-) A-I      intronic
chr16:89717002(-) A-I      intronic
chr16:89721029(-) A-I      intronic
chr16:89719909(-) A-I      intronic
chr16:89719651(-) A-I      intronic
chr16:89720994(-) A-I      intronic
chr16:89719499(-) A-I      intronic
chr16:89716727(-) A-I      intronic
chr16:89719595(-) A-I      intronic
chr16:89717048(-) A-I      intronic
chr16:89722817(-) A-I      intronic
chr16:89719907(-) A-I      intronic
chr16:89717687(-) A-I      intronic
chr16:89722717(-) A-I      intronic
chr16:89719594(-) A-I      intronic
chr16:89717667(-) A-I      intronic
chr16:89715431(-) A-I      intronic
chr16:89719863(-) A-I      intronic
chr16:89717716(-) A-I      intronic
chr16:89716649(-) A-I      intronic
chr16:89717541(-) A-I      intronic
chr16:89719899(-) A-I      intronic
chr16:89719597(-) A-I      intronic
chr16:89722561(-) A-I      intronic
chr16:89722818(-) A-I      intronic
chr16:89719598(-) A-I      intronic
chr16:89716957(-) A-I      intronic
chr16:89719608(-) A-I      intronic
chr16:89719882(-) A-I      intronic
chr16:89722307(-) A-I      intronic
chr16:89716013(-) A-I      intronic
chr16:89716049(-) A-I      intronic
chr16:89719784(-) A-I      intronic
chr16:89716122(-) A-I      intronic
chr16:89719919(-) A-I      intronic
chr16:89719883(-) A-I      intronic
chr16:89719772(-) A-I      intronic
chr16:89717696(-) A-I      intronic
chr16:89719864(-) A-I      intronic
chr16:89716679(-) A-I      intronic
chr16:89721048(-) A-I      intronic
chr16:89719590(-) A-I      intronic
chr16:89716115(-) A-I      intronic
chr16:89720995(-) A-I      intronic
chr16:89721909(-) A-I      intronic
chr16:89718405(-) A-I      intronic
chr16:89720977(-) A-I      intronic
chr16:89717603(-) A-I      intronic
chr16:89715129(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CHMP1A
chr16:89717541(-) A-I intron -    21960545

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CHMP1A
chr16:89710842-89710843(-) m6A 3'UTR//exon       27773535
chr16:89710860-89710861(-) m6A 3'UTR//exon       27773535
chr16:89711400-89711401(-) m6A 3'UTR//exon       24284625//25456834//24981863
chr16:89711446-89711447(-) m6A 3'UTR//exon       24284625//25456834//24981863
chr16:89711570-89711571(-) m6A 3'UTR//exon       24284625
chr16:89711631-89711632(-) m6A 3'UTR//exon       24284625//27773535
chr16:89711828-89711829(-) m6A 3'UTR//exon       24284625//24209618//25456834//27773535//27773536
chr16:89711833-89711834(-) m6A 3'UTR//exon       24284625//24209618//25456834//27773535//27773536
chr16:89712044-89712045(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr16:89712101-89712102(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr16:89712151-89712152(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr16:89712166-89712167(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr16:89712196-89712197(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr16:89712477-89712478(-) m6A 3'UTR//CDS//exon       24284625//24209618//27773536
chr16:89712949-89712950(-) m6A 3'UTR//CDS//exon       24284625//27773536
chr16:89713015-89713016(-) m6A 3'UTR//CDS//exon       24284625//27773536
chr16:89713063-89713064(-) m6A 3'UTR//CDS//exon       24284625
chr16:89713111-89713112(-) m6A 3'UTR//CDS//exon       24284625//27773535
chr16:89713243-89713244(-) m6A exon//intron       24284625//27773535
chr16:89713629-89713630(-) m6A CDS//exon       24284625
chr16:89713653-89713654(-) m6A CDS//exon       24284625
chr16:89713680-89713681(-) m6A CDS//exon       24284625//27773535
chr16:89713701-89713702(-) m6A CDS//exon       24284625//27773535
chr16:89715778-89715779(-) m6A CDS//exon//intron       24981863//27773535//27371828
chr16:89715828-89715829(-) m6A 5'UTR//CDS//exon       24284625//24981863//27773535//27371828
chr16:89715972-89715973(-) m6A exon//intron       24284625//24981863//27371828
chr16:89715978-89715979(-) m6A exon//intron       24284625//24981863//27371828
chr16:89715983-89715984(-) m6A exon//intron       24284625//24981863//27371828
chr16:89715988-89715989(-) m6A exon//intron       24284625//24981863//27371828
chr16:89715993-89715994(-) m6A exon//intron       24284625//24981863//27371828
chr16:89715998-89715999(-) m6A exon//intron       24284625//24981863//27371828
chr16:89718007-89718008(-) m6A 5'UTR//CDS//exon       24284625//24981863//27371828//27773536
chr16:89724060-89724061(-) m6A 5'UTR//exon       24284625//24981863//27371828//27773536
chr16:89724165-89724166(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CHMP1A
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleus HeLa-S3 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART4-3p
Interactor2: CHMP1A

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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