Basic Information:

  VIRBase ID:  

VHID00408627

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART4-3p:  MIMAT0009204          KCNN1:  NR_170373     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART4-3p	KCNN1
miRBase Accession/Entrez ID	MIMAT0009204	3780
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	hSK1//KCa2.1//SK1//SKCA1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	KCNN1	chr19:18074290(+) A-I      intronic chr19:18074281(+) A-I      intronic chr19:18105518(+) A-I      intronic chr19:18074263(+) A-I      intronic chr19:18072490(+) A-I      intronic chr19:18069907(+) A-I      intronic chr19:18067457(+) A-I      intronic chr19:18067009(+) A-I      intronic chr19:18105372(+) A-I      intronic chr19:18105553(+) A-I      intronic chr19:18098551(+) A-I      intronic chr19:18106633(+) A-I      intronic chr19:18105588(+) A-I      intronic chr19:18108428(+) A-I      intronic chr19:18087661(+) A-I      intronic chr19:18066034(+) A-I      intronic chr19:18086996(+) A-I      intronic chr19:18089625(+) A-I      intronic chr19:18098688(+) A-I      intronic chr19:18069035(+) A-I      intronic chr19:18081207(+) A-I      intronic chr19:18072632(+) A-I      intronic chr19:18096919(+) A-I      intronic chr19:18087297(+) A-I      intronic chr19:18088292(+) A-I      intronic chr19:18069111(+) A-I      intronic chr19:18069920(+) A-I      intronic chr19:18096864(+) A-I      intronic chr19:18087664(+) A-I      intronic chr19:18065119(+) A-I      intronic chr19:18089638(+) A-I      intronic chr19:18106678(+) A-I      intronic chr19:18091915(+) A-I      intronic chr19:18097051(+) A-I      intronic chr19:18067345(+) A-I      intronic chr19:18104996(+) A-I      intronic chr19:18070647(+) A-I      intronic chr19:18105492(+) A-I      intronic chr19:18082801(+) A-I      intronic chr19:18069155(+) A-I      intronic chr19:18097647(+) A-I      intronic chr19:18069973(+) A-I      intronic chr19:18069963(+) A-I      intronic chr19:18106677(+) A-I      intronic chr19:18065727(+) A-I      intronic chr19:18087245(+) A-I      intronic chr19:18099573(+) A-I      intronic chr19:18097805(+) A-I      intronic chr19:18070677(+) A-I      intronic chr19:18070674(+) A-I      intronic chr19:18098893(+) A-I      intronic chr19:18082724(+) A-I      intronic chr19:18100125(+) A-I      intronic chr19:18105034(+) A-I      intronic chr19:18072484(+) A-I      intronic chr19:18091946(+) A-I      intronic chr19:18089495(+) A-I      intronic chr19:18104998(+) A-I      intronic chr19:18081445(+) A-I      intronic chr19:18081309(+) A-I      intronic chr19:18070401(+) A-I      intronic chr19:18072412(+) A-I      intronic chr19:18097755(+) A-I      intronic chr19:18072637(+) A-I      intronic chr19:18098193(+) A-I      intronic chr19:18098019(+) A-I      intronic chr19:18067504(+) A-I      intronic chr19:18084006(+) A-I      intronic chr19:18098596(+) A-I      intronic chr19:18072572(+) A-I      intronic chr19:18067370(+) A-I      intronic chr19:18082992(+) A-I      intronic chr19:18082707(+) A-I      intronic chr19:18069180(+) A-I      intronic chr19:18081955(+) A-I      intronic chr19:18086923(+) A-I      intronic chr19:18097696(+) A-I      intronic chr19:18082800(+) A-I      intronic chr19:18097868(+) A-I      intronic chr19:18069412(+) A-I      intronic chr19:18065696(+) A-I      intronic chr19:18097716(+) A-I      intronic chr19:18072491(+) A-I      intronic chr19:18097745(+) A-I      intronic chr19:18065107(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	KCNN1	chr19:18069155(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	KCNN1	chr19:18084701-18084702(+) m6A CDS       24209618 chr19:18084767-18084768(+) m6A CDS       25456834 chr19:18084776-18084777(+) m6A CDS       25456834 chr19:18084890-18084891(+) m6A CDS       25456834 chr19:18084951-18084952(+) m6A CDS       25456834 chr19:18085032-18085033(+) Y CDS       26075521 chr19:18109153-18109154(+) m6A CDS       24209618 chr19:18109204-18109205(+) m6A CDS       24209618 chr19:18109234-18109235(+) m6A 3'UTR       25456834 chr19:18109335-18109336(+) m6A 3'UTR       25456834//24981863 chr19:18109356-18109357(+) m6A 3'UTR       24209618//25456834//24981863//22608085 chr19:18109382-18109383(+) m6A 3'UTR       24209618//25456834//24981863//22608085 chr19:18109507-18109508(+) m6A 3'UTR       25456834 chr19:18109689-18109690(+) m6A 3'UTR       25456834 chr19:18109703-18109704(+) m6A 3'UTR       25456834 chr19:18109742-18109743(+) m6A 3'UTR       25456834 chr19:18109801-18109802(+) m6A 3'UTR       25456834 chr19:18109951-18109952(+) m6A 3'UTR       25456834 chr19:18109978-18109979(+) m6A 3'UTR       25456834 chr19:18110013-18110014(+) m6A 3'UTR       25456834 chr19:18110044-18110045(+) m6A 3'UTR       25456834 chr19:18110073-18110074(+) m6A 3'UTR       25456834 chr19:18110078-18110079(+) m6A 3'UTR       25456834 chr19:18110284-18110285(+) m6A 3'UTR       25456834 chr19:18110315-18110316(+) m6A 3'UTR       25456834 chr19:18110321-18110322(+) m6A 3'UTR       25456834 chr19:18110335-18110336(+) m6A 3'UTR       25456834 chr19:18110402-18110403(+) m6A 3'UTR       25456834 chr19:18110437-18110438(+) m6A 3'UTR       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	KCNN1	Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART4-3p
Interactor2: KCNN1

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg