Basic Information:

  VIRBase ID:  

VHID00408508

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART4-3p:  MIMAT0009204          GLS:  NM_001256310     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART4-3p	GLS
miRBase Accession/Entrez ID	MIMAT0009204	2744
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	AAD20//CASGID//DEE71//EIEE71//GAC//GAM//GDPAG//GLS1//KGA

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GLS	chr2:191751446(+) A-I      intronic chr2:191807251(+) A-I      intronic chr2:191751465(+) A-I      intronic chr2:191814238(+) A-I      intronic chr2:191751455(+) A-I      intronic chr2:191751486(+) A-I      intronic chr2:191751422(+) A-I      intronic chr2:191814234(+) A-I      intronic chr2:191782553(+) A-I      intronic chr2:191782559(+) A-I      intronic chr2:191782560(+) A-I      intronic chr2:191814233(+) A-I      intronic chr2:191814224(+) A-I      intronic chr2:191751466(+) A-I      intronic chr2:191810125(+) A-I      intronic chr2:191754936(+) A-I      intronic chr2:191749937(+) A-I      intronic chr2:191749992(+) A-I      intronic chr2:191750018(+) A-I      intronic chr2:191750017(+) A-I      intronic chr2:191750059(+) A-I      intronic chr2:191750084(+) A-I      intronic chr2:191750113(+) A-I      intronic chr2:191750838(+) A-I      intronic chr2:191750889(+) A-I      intronic chr2:191751456(+) A-I      intronic chr2:191751491(+) A-I      intronic chr2:191751492(+) A-I      intronic chr2:191751515(+) A-I      intronic chr2:191754930(+) A-I      intronic chr2:191754949(+) A-I      intronic chr2:191810127(+) A-I      intronic chr2:191789457(+) A-I      intronic chr2:191789485(+) A-I      intronic chr2:191810111(+) A-I      intronic chr2:191750057(+) A-I      intronic chr2:191789507(+) A-I      intronic chr2:191774586(+) A-I      intronic chr2:191761778(+) A-I      intronic chr2:191751410(+) A-I      intronic chr2:191816749(+) A-I      intronic chr2:191751587(+) A-I      intronic chr2:191751495(+) A-I      intronic chr2:191814242(+) A-I      intronic chr2:191750047(+) A-I      intronic chr2:191750190(+) A-I      intronic chr2:191794819(+) A-I      intronic chr2:191794989(+) A-I      intronic chr2:191806988(+) A-I      intronic chr2:191807069(+) A-I      intronic chr2:191761893(+) A-I      intronic chr2:191789530(+) A-I      intronic chr2:191751386(+) A-I      intronic chr2:191751413(+) A-I      intronic chr2:191751612(+) A-I      intronic chr2:191810319(+) A-I      intronic chr2:191761932(+) A-I      intronic chr2:191814158(+) A-I      intronic chr2:191750063(+) A-I      intronic chr2:191750083(+) A-I      intronic chr2:191750099(+) A-I      intronic chr2:191825176(+) A-I      intronic chr2:191789432(+) A-I      intronic chr2:191779846(+) A-I      intronic chr2:191751408(+) A-I      intronic chr2:191751480(+) A-I      intronic chr2:191751387(+) A-I      intronic chr2:191761832(+) A-I      intronic chr2:191774584(+) A-I      intronic chr2:191794905(+) A-I      intronic chr2:191750150(+) A-I      intronic chr2:191826090(+) A-I      intronic chr2:191758563(+) A-I      intronic chr2:191761855(+) A-I      intronic chr2:191749968(+) A-I      intronic chr2:191749998(+) A-I      intronic chr2:191751522(+) A-I      intronic chr2:191750192(+) A-I      intronic chr2:191750804(+) A-I      intronic chr2:191793815(+) A-I      intronic chr2:191795058(+) A-I      intronic chr2:191750178(+) A-I      intronic chr2:191751464(+) A-I      intronic chr2:191789596(+) A-I      intronic chr2:191750668(+) A-I      intronic chr2:191778779(+) A-I      intronic chr2:191772031(+) A-I      intronic chr2:191761926(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GLS	chr2:191749968(+) A-G intron -    22484847 chr2:191749982(+) A-G intron -    22484847 chr2:191749997(+) A-G intron -    22484847 chr2:191749998(+) A-G intron -    22484847 chr2:191750047(+) A-G intron -    22484847 chr2:191750057(+) A-G intron -    22484847 chr2:191750063(+) A-G intron -    22484847 chr2:191750096(+) A-G intron -    22484847 chr2:191750116(+) A-G intron -    22484847 chr2:191750178(+) A-G intron -    22484847 chr2:191750190(+) A-G intron -    22484847 chr2:191750668(+) A-G intron -    22484847 chr2:191750804(+) A-G intron -    22484847 chr2:191750846(+) T-C intron -    22484847 chr2:191751386(+) A-G intron -    22484847 chr2:191751387(+) A-G intron -    22484847 chr2:191751408(+) A-G intron -    22484847 chr2:191751410(+) A-G intron -    22484847 chr2:191751413(+) A-G intron -    22484847 chr2:191751464(+) A-G intron -    22484847 chr2:191751495(+) A-G intron -    22484847 chr2:191751522(+) A-G intron -    22484847 chr2:191751587(+) A-G intron -    22484847 chr2:191751612(+) A-G intron -    22484847 chr2:191758563(+) A-G intron -    22484847 chr2:191761857(+) T-C intron -    22484847 chr2:191789432(+) A-G intron -    22484847 chr2:191793772(+) C-T intron -    22484847 chr2:191794292(+) T-G intron -    22484847 chr2:191814158(+) A-G intron -    22484847 chr2:191816749(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GLS	chr2:191745575-191745576(+) m6A 5'UTR       24284625//24209618//24981863//22575960//22608085 chr2:191745676-191745677(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27773536//22575960//22608085 chr2:191745731-191745732(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27773536//22575960//22608085 chr2:191745749-191745750(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27773536//22575960//22608085 chr2:191745800-191745801(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//27773536//22575960//22608085 chr2:191745844-191745845(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr2:191759886-191759887(+) m6A CDS//exon       24209618//24981863//22575960 chr2:191759940-191759941(+) m6A CDS//exon       - chr2:191760364-191760365(+) Cm CDS//exon       - chr2:191796314-191796315(+) m6A CDS//exon       24284625//27773535 chr2:191796329-191796330(+) m6A CDS//exon       24284625//27773535 chr2:191797387-191797388(+) m6A exon//intron       24284625//24981863//27773535//22608085 chr2:191797433-191797434(+) m6A exon//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr2:191797452-191797453(+) m6A CDS//exon//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr2:191797460-191797461(+) m6A CDS//exon//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr2:191797482-191797483(+) m6A CDS//exon//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr2:191797498-191797499(+) m6A CDS//exon//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr2:191797535-191797536(+) m6A CDS//exon//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr2:191797634-191797635(+) m6A 3'UTR//exon//intron       - chr2:191799624-191799625(+) m6A 3'UTR//intron       26404942 chr2:191799640-191799641(+) m6A 3'UTR//intron       26404942 chr2:191799658-191799659(+) m6A 3'UTR//intron       26404942 chr2:191799698-191799699(+) m6A 3'UTR//intron       26404942 chr2:191827594-191827595(+) m6A CDS       24981863 chr2:191827679-191827680(+) m6A CDS       24981863 chr2:191827774-191827775(+) m6A 3'UTR       - chr2:191829079-191829080(+) m6A 3'UTR       24981863 chr2:191829856-191829857(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GLS	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART4-3p
Interactor2: GLS

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg