Detail Information

Basic Information:


  VIRBase ID:  

VHID00408506

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6055

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART4-3p:           GLO1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART4-3p GLO1
miRBase
Accession/Entrez ID		 MIMAT0009204 2739
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - GLOD1//GLYI//HEL-S-74

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR GLO1
chr6:38649013(-) A-I      intronic
chr6:38649034(-) A-I      intronic
chr6:38648946(-) A-I      intronic
chr6:38648214(-) A-I      intronic
chr6:38648173(-) A-I      intronic
chr6:38648135(-) A-I      intronic
chr6:38647539(-) A-I      intronic
chr6:38647447(-) A-I      intronic
chr6:38647328(-) A-I      intronic
chr6:38647071(-) A-I      intronic
chr6:38646988(-) A-I      intronic
chr6:38649006(-) A-I      intronic
chr6:38649033(-) A-I      intronic
chr6:38648500(-) A-I      intronic
chr6:38648523(-) A-I      intronic
chr6:38648532(-) A-I      intronic
chr6:38648537(-) A-I      intronic
chr6:38648543(-) A-I      intronic
chr6:38648548(-) A-I      intronic
chr6:38646964(-) A-I      intronic
chr6:38648551(-) A-I      intronic
chr6:38649003(-) A-I      intronic
chr6:38648587(-) A-I      intronic
chr6:38648215(-) A-I      intronic
chr6:38661651(-) A-I      intronic
chr6:38669953(-) A-I      intronic
chr6:38661758(-) A-I      intronic
chr6:38648961(-) A-I      intronic
chr6:38661601(-) A-I      intronic
chr6:38661563(-) A-I      intronic
chr6:38659267(-) A-I      intronic
chr6:38659264(-) A-I      intronic
chr6:38659262(-) A-I      intronic
chr6:38659249(-) A-I      intronic
chr6:38657478(-) A-I      intronic
chr6:38651563(-) A-I      intronic
chr6:38647487(-) A-I      intronic
chr6:38647337(-) A-I      intronic
chr6:38648586(-) A-I      intronic
chr6:38657778(-) A-I      intronic
chr6:38659182(-) A-I      intronic
chr6:38669959(-) A-I      intronic
chr6:38649022(-) A-I      intronic
chr6:38668809(-) A-I      intronic
chr6:38648669(-) A-I      intronic
chr6:38649016(-) A-I      intronic
chr6:38662210(-) A-I      intronic
chr6:38648977(-) A-I      intronic
chr6:38669954(-) A-I      intronic
chr6:38645322(-) A-I      intronic
chr6:38645349(-) A-I      intronic
chr6:38662403(-) A-I      intronic
chr6:38657849(-) A-I      intronic
chr6:38649015(-) A-I      intronic
chr6:38657559(-) A-I      intronic
chr6:38649104(-) A-I      intronic
chr6:38647369(-) A-I      intronic
chr6:38647067(-) A-I      intronic
chr6:38645442(-) A-I      intronic
chr6:38649067(-) A-I      intronic
chr6:38647041(-) A-I      intronic
chr6:38648979(-) A-I      intronic
chr6:38657488(-) A-I      intronic
chr6:38647315(-) A-I      intronic
chr6:38662198(-) A-I      intronic
chr6:38647104(-) A-I      intronic
chr6:38645363(-) A-I      intronic
chr6:38662395(-) A-I      intronic
chr6:38647229(-) A-I      intronic
chr6:38647459(-) A-I      intronic
chr6:38662195(-) A-I      intronic
chr6:38662360(-) A-I      intronic
chr6:38648253(-) A-I      intronic
chr6:38647228(-) A-I      intronic
chr6:38662333(-) A-I      intronic
chr6:38647327(-) A-I      intronic
chr6:38659196(-) A-I      intronic
chr6:38647518(-) A-I      intronic
chr6:38647486(-) A-I      intronic
chr6:38664953(-) A-I      intronic
chr6:38647024(-) A-I      intronic
chr6:38662315(-) A-I      intronic
chr6:38647070(-) A-I      intronic
chr6:38645358(-) A-I      intronic
chr6:38648454(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED GLO1
chr6:38647315(-) A-G intron -    22484847
chr6:38647406(-) A-G intron -    22484847
chr6:38647449(-) A-G intron -    22484847
chr6:38647486(-) A-G intron -    22484847
chr6:38647507(-) A-G intron -    22484847
chr6:38647518(-) A-G intron -    22484847
chr6:38648585(-) A-G intron -    22484847
chr6:38648665(-) A-G intron -    22484847
chr6:38648669(-) A-G intron -    22484847
chr6:38648979(-) A-G intron -    22484847
chr6:38657559(-) A-G intron -    22484847
chr6:38657849(-) A-G intron -    22484847
chr6:38657855(-) A-G intron -    22484847
chr6:38661625(-) A-G intron -    22484847
chr6:38661759(-) A-G intron -    22484847
chr6:38662395(-) A-G intron -    22484847
chr6:38662403(-) A-G intron -    22484847
chr6:38668809(-) A-G intron -    22484847
chr6:38669880(-) A-G intron -    22484847
chr6:38669954(-) A-G intron -    22484847
chr6:38669959(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GLO1
chr6:38644988-38644989(-) m6A 3'UTR//exon       24981863//26404942
chr6:38645029-38645030(-) m6A 3'UTR//exon       24981863//26404942
chr6:38670759-38670760(-) m6A CDS       24981863
chr6:38670821-38670822(-) m6A CDS       24981863//26404942

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate GLO1
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART4-3p
Interactor2: GLO1

Evidence Support:


Weak-Evidence PAR-CLIP
Prediction-Evidence miRanda//PARalyzer//PITA//RNAHybrid//Targetscan
Support Database ViRBase//VIRmiRNA//VmiReg

References:


PMID 22291592 Target region 3'UTR
Source ViRBase//VIRmiRNA//VmiReg Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.We identified an additional 2,972 CDS miRNA-interaction sites present in at least two libraries, 89.7% of which could be assigned to a miRNA (Table S7).

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