Detail Information

Basic Information:


  VIRBase ID:  

VHID00407903

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART19-5p:           CADM4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART19-5p CADM4
miRBase
Accession/Entrez ID		 MIMAT0004836 199731
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - IGSF4C//Necl-4//NECL4//synCAM4//TSLL2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CADM4
chr19:44137405(-) A-I      intronic
chr19:44137439(-) A-I      intronic
chr19:44137396(-) A-I      intronic
chr19:44137395(-) A-I      intronic
chr19:44135393(-) A-I      intronic
chr19:44136100(-) A-I      intronic
chr19:44137167(-) A-I      intronic
chr19:44137202(-) A-I      intronic
chr19:44137515(-) A-I      intronic
chr19:44132321(-) A-I      intronic
chr19:44137390(-) A-I      intronic
chr19:44133808(-) A-I      intronic
chr19:44138123(-) A-I      intronic
chr19:44136979(-) A-I      intronic
chr19:44137054(-) A-I      intronic
chr19:44133935(-) A-I      intronic
chr19:44134276(-) A-I      intronic
chr19:44136147(-) A-I      intronic
chr19:44137386(-) A-I      intronic
chr19:44135238(-) A-I      intronic
chr19:44137498(-) A-I      intronic
chr19:44134196(-) A-I      intronic
chr19:44133908(-) A-I      intronic
chr19:44127914(-) A-I      intronic
chr19:44133964(-) A-I      intronic
chr19:44135490(-) A-I      intronic
chr19:44137071(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CADM4
chr19:44126522-44126523(-) m6A 3'UTR       27773535
chr19:44126534-44126535(-) m6A 3'UTR       27773535
chr19:44126608-44126609(-) m6A 3'UTR       24981863//27773535
chr19:44126615-44126616(-) m6A 3'UTR       24981863//27773535
chr19:44126622-44126623(-) m6A 3'UTR       24981863//27773535
chr19:44126629-44126630(-) m6A 3'UTR       24981863//27773535
chr19:44126927-44126928(-) m6A 3'UTR       24209618//24981863//27773535
chr19:44127078-44127079(-) m6A 3'UTR       24209618
chr19:44127103-44127104(-) m6A 3'UTR       24209618
chr19:44127163-44127164(-) m6A 3'UTR       24209618//27773535
chr19:44127244-44127245(-) m6A 3'UTR       24981863//27773535
chr19:44127403-44127404(-) m6A 3'UTR       24209618//24981863//27773535
chr19:44127413-44127414(-) m6A 3'UTR       24209618//24981863//27773535
chr19:44127511-44127512(-) m6A CDS       24209618//24981863//27773535
chr19:44127553-44127554(-) m6A CDS       24209618//27773535
chr19:44130312-44130313(-) m6A CDS       -
chr19:44130331-44130332(-) m6A CDS       -
chr19:44130373-44130374(-) m6A CDS       24284625
chr19:44130952-44130953(-) m6A CDS       24284625
chr19:44131819-44131820(-) m6A CDS       24209618
chr19:44131833-44131834(-) m6A CDS       24209618
chr19:44131921-44131922(-) m6A CDS       24209618
chr19:44131934-44131935(-) m6A CDS       24209618

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BART19-5p
Exosome B cell line (Raji)     21505438
CADM4
Chromatin K562 cells     -
Exosome Blood     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART19-5p
Interactor2: CADM4

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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