Basic Information:

  VIRBase ID:  

VHID00407773

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART19-5p:  MIMAT0004836          ZNF280B:  NR_130642     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART19-5p	ZNF280B
miRBase Accession/Entrez ID	MIMAT0004836	140883
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	5'OY11.1//D87009.C22.3//SUHW2//ZNF279//ZNF632

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ZNF280B	chr22:22854998(-) A-I      intronic chr22:22858635(-) A-I      intronic chr22:22847033(-) A-I      intronic chr22:22849103(-) A-I      intronic chr22:22849163(-) A-I      intronic chr22:22851317(-) A-I      intronic chr22:22851721(-) A-I      intronic chr22:22845916(-) A-I      intronic chr22:22850553(-) A-I      intronic chr22:22851170(-) A-I      intronic chr22:22850555(-) A-I      intronic chr22:22850620(-) A-I      intronic chr22:22851227(-) A-I      intronic chr22:22851302(-) A-I      intronic chr22:22855687(-) A-I      intronic chr22:22855696(-) A-I      intronic chr22:22855707(-) A-I      intronic chr22:22855731(-) A-I      intronic chr22:22855947(-) A-I      intronic chr22:22855974(-) A-I      intronic chr22:22858513(-) A-I      intronic chr22:22858580(-) A-I      intronic chr22:22850559(-) A-I      intronic chr22:22858659(-) A-I      intronic chr22:22858678(-) A-I      intronic chr22:22858689(-) A-I      intronic chr22:22847510(-) A-I      intronic chr22:22847506(-) A-I      intronic chr22:22847505(-) A-I      intronic chr22:22846007(-) A-I      intronic chr22:22845973(-) A-I      intronic chr22:22845962(-) A-I      intronic chr22:22845959(-) A-I      intronic chr22:22854971(-) A-I      intronic chr22:22855252(-) A-I      intronic chr22:22851286(-) A-I      intronic chr22:22856131(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ZNF280B	chr22:22840126-22840127(-) m6A 3'UTR       27773535 chr22:22840751-22840752(-) m6A 3'UTR//intron       24981863 chr22:22840779-22840780(-) m6A 3'UTR//intron       24981863 chr22:22840789-22840790(-) m6A 3'UTR//intron       24981863 chr22:22840862-22840863(-) m6A 3'UTR//intron       24981863 chr22:22841904-22841905(-) m6A 3'UTR       27773535 chr22:22841957-22841958(-) m6A 3'UTR       27773535//22608085 chr22:22841984-22841985(-) m6A 3'UTR       27773535//22608085 chr22:22842019-22842020(-) m6A 3'UTR       24981863//27773535//22608085 chr22:22842032-22842033(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr22:22842042-22842043(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr22:22842055-22842056(-) m6A 3'UTR       24284625//24981863//27773535//22608085 chr22:22842139-22842140(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr22:22842199-22842200(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr22:22842228-22842229(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr22:22842285-22842286(-) m6A CDS       24284625//24981863//27773535//22608085 chr22:22842396-22842397(-) m6A CDS       27773535//22608085 chr22:22842440-22842441(-) m6A CDS       27773535//22608085 chr22:22842465-22842466(-) m6A CDS       27773535//22608085 chr22:22842542-22842543(-) m6A CDS       24981863//27773535//22608085 chr22:22842573-22842574(-) m6A CDS       24981863//27773535//22608085 chr22:22842701-22842702(-) m6A CDS       24284625//24981863//27773535//22608085 chr22:22842816-22842817(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr22:22842823-22842824(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr22:22842850-22842851(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr22:22842906-22842907(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr22:22842911-22842912(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr22:22842939-22842940(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr22:22842998-22842999(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr22:22843156-22843157(-) m6A CDS       24981863//27773535//22608085 chr22:22843181-22843182(-) m6A CDS       24284625//24981863//27773535//22608085 chr22:22843354-22843355(-) m6A CDS       24284625//24981863//27773535//22608085 chr22:22843446-22843447(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr22:22843538-22843539(-) m6A CDS       24209618//24981863//27773535//27371828//22608085 chr22:22843547-22843548(-) m6A CDS       24209618//24981863//27773535//22608085 chr22:22843561-22843562(-) m6A CDS       24209618//24981863//27773535//22608085 chr22:22843615-22843616(-) m6A CDS       24209618//24981863//27773535//22608085 chr22:22843660-22843661(-) m6A CDS       24981863//27773535//22608085 chr22:22843665-22843666(-) m6A CDS       24981863//27773535//22608085 chr22:22843676-22843677(-) m6A CDS       24981863//27773535//22608085 chr22:22843687-22843688(-) m6A CDS       24981863//27773535//22608085 chr22:22843717-22843718(-) m6A CDS       24981863//27773535//22608085 chr22:22843761-22843762(-) m6A 5'UTR       24981863//27773535//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART19-5p	Exosome B cell line (Raji)     21505438
	ZNF280B	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART19-5p
Interactor2: ZNF280B

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg