Detail Information

Basic Information:


  VIRBase ID:  

VHID00407687

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART19-5p:           NIPA1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART19-5p NIPA1
miRBase
Accession/Entrez ID		 MIMAT0004836 123606
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - FSP3//SLC57A1//SPG6

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NIPA1
chr15:23070823(-) A-I      intronic
chr15:23070837(-) A-I      intronic
chr15:23084678(-) A-I      intronic
chr15:23067425(-) A-I      intronic
chr15:23065180(-) A-I      intronic
chr15:23056156(-) A-I      intronic
chr15:23066938(-) A-I      intronic
chr15:23054827(-) A-I      intronic
chr15:23065157(-) A-I      intronic
chr15:23065155(-) A-I      intronic
chr15:23065145(-) A-I      intronic
chr15:23050415(-) A-I      intronic
chr15:23065080(-) A-I      intronic
chr15:23072452(-) A-I      intronic
chr15:23065040(-) A-I      intronic
chr15:23065018(-) A-I      intronic
chr15:23063877(-) A-I      intronic
chr15:23049942(-) A-I      intronic
chr15:23056740(-) A-I      intronic
chr15:23063867(-) A-I      intronic
chr15:23063863(-) A-I      intronic
chr15:23073407(-) A-I      intronic
chr15:23063510(-) A-I      intronic
chr15:23057668(-) A-I      intronic
chr15:23057650(-) A-I      intronic
chr15:23063736(-) A-I      intronic
chr15:23057625(-) A-I      intronic
chr15:23057603(-) A-I      intronic
chr15:23057573(-) A-I      intronic
chr15:23057569(-) A-I      intronic
chr15:23057553(-) A-I      intronic
chr15:23056855(-) A-I      intronic
chr15:23056780(-) A-I      intronic
chr15:23056779(-) A-I      intronic
chr15:23056762(-) A-I      intronic
chr15:23080173(-) A-I      intronic
chr15:23056750(-) A-I      intronic
chr15:23056738(-) A-I      intronic
chr15:23056713(-) A-I      intronic
chr15:23056699(-) A-I      intronic
chr15:23056620(-) A-I      intronic
chr15:23054392(-) A-I      intronic
chr15:23054543(-) A-I      intronic
chr15:23071277(-) A-I      intronic
chr15:23084688(-) A-I      intronic
chr15:23056607(-) A-I      intronic
chr15:23055420(-) A-I      intronic
chr15:23056377(-) A-I      intronic
chr15:23073245(-) A-I      intronic
chr15:23084671(-) A-I      intronic
chr15:23055453(-) A-I      intronic
chr15:23070787(-) A-I      intronic
chr15:23073218(-) A-I      intronic
chr15:23084685(-) A-I      intronic
chr15:23055992(-) A-I      intronic
chr15:23076530(-) A-I      intronic
chr15:23055988(-) A-I      intronic
chr15:23049958(-) A-I      intronic
chr15:23050335(-) A-I      intronic
chr15:23050348(-) A-I      intronic
chr15:23050352(-) A-I      intronic
chr15:23050399(-) A-I      intronic
chr15:23050416(-) A-I      intronic
chr15:23055960(-) A-I      intronic
chr15:23050503(-) A-I      intronic
chr15:23064324(-) A-I      intronic
chr15:23068098(-) A-I      intronic
chr15:23050511(-) A-I      intronic
chr15:23054287(-) A-I      intronic
chr15:23054350(-) A-I      intronic
chr15:23057677(-) A-I      intronic
chr15:23064124(-) A-I      intronic
chr15:23055961(-) A-I      intronic
chr15:23069946(-) A-I      intronic
chr15:23054351(-) A-I      intronic
chr15:23080050(-) A-I      intronic
chr15:23054789(-) A-I      intronic
chr15:23056428(-) A-I      intronic
chr15:23083976(-) A-I      intronic
chr15:23073648(-) A-I      intronic
chr15:23050329(-) A-I      intronic
chr15:23055106(-) A-I      intronic
chr15:23054391(-) A-I      intronic
chr15:23073175(-) A-I      intronic
chr15:23056330(-) A-I      intronic
chr15:23056438(-) A-I      intronic
chr15:23084739(-) A-I      intronic
chr15:23084733(-) A-I      intronic
chr15:23084729(-) A-I      intronic
chr15:23057676(-) A-I      intronic
chr15:23076886(-) A-I      intronic
chr15:23063860(-) A-I      intronic
chr15:23055432(-) A-I      intronic
chr15:23068088(-) A-I      intronic
chr15:23057695(-) A-I      intronic
chr15:23055520(-) A-I      intronic
chr15:23055521(-) A-I      intronic
chr15:23084728(-) A-I      intronic
chr15:23055942(-) A-I      intronic
chr15:23055949(-) A-I      intronic
chr15:23054810(-) A-I      intronic
chr15:23084718(-) A-I      intronic
chr15:23084665(-) A-I      intronic
chr15:23084247(-) A-I      intronic
chr15:23084228(-) A-I      intronic
chr15:23084184(-) A-I      intronic
chr15:23056545(-) A-I      intronic
chr15:23071386(-) A-I      intronic
chr15:23083975(-) A-I      intronic
chr15:23084031(-) A-I      intronic
chr15:23064325(-) A-I      intronic
chr15:23082577(-) A-I      intronic
chr15:23055384(-) A-I      intronic
chr15:23082522(-) A-I      intronic
chr15:23082452(-) A-I      intronic
chr15:23081341(-) A-I      intronic
chr15:23084018(-) A-I      intronic
chr15:23080592(-) A-I      intronic
chr15:23080582(-) A-I      intronic
chr15:23083816(-) A-I      intronic
chr15:23080528(-) A-I      intronic
chr15:23070796(-) A-I      intronic
chr15:23080525(-) A-I      intronic
chr15:23080356(-) A-I      intronic
chr15:23080292(-) A-I      intronic
chr15:23080301(-) A-I      intronic
chr15:23080275(-) A-I      intronic
chr15:23063778(-) A-I      intronic
chr15:23080274(-) A-I      intronic
chr15:23080225(-) A-I      intronic
chr15:23077024(-) A-I      intronic
chr15:23080027(-) A-I      intronic
chr15:23077113(-) A-I      intronic
chr15:23076989(-) A-I      intronic
chr15:23075368(-) A-I      intronic
chr15:23075363(-) A-I      intronic
chr15:23075039(-) A-I      intronic
chr15:23073547(-) A-I      intronic
chr15:23073429(-) A-I      intronic
chr15:23073345(-) A-I      intronic
chr15:23075935(-) A-I      intronic
chr15:23073167(-) A-I      intronic
chr15:23073139(-) A-I      intronic
chr15:23071529(-) A-I      intronic
chr15:23065568(-) A-I      intronic
chr15:23071434(-) A-I      intronic
chr15:23071418(-) A-I      intronic
chr15:23050494(-) A-I      intronic
chr15:23070705(-) A-I      intronic
chr15:23069982(-) A-I      intronic
chr15:23068952(-) A-I      intronic
chr15:23068930(-) A-I      intronic
chr15:23068828(-) A-I      intronic
chr15:23055454(-) A-I      intronic
chr15:23055755(-) A-I      intronic
chr15:23068814(-) A-I      intronic
chr15:23068168(-) A-I      intronic
chr15:23068167(-) A-I      intronic
chr15:23065604(-) A-I      intronic
chr15:23056348(-) A-I      intronic
chr15:23068152(-) A-I      intronic
chr15:23068127(-) A-I      intronic
chr15:23067645(-) A-I      intronic
chr15:23067534(-) A-I      intronic
chr15:23067427(-) A-I      intronic
chr15:23055468(-) A-I      intronic
chr15:23080580(-) A-I      intronic
chr15:23076575(-) A-I      intronic
chr15:23054809(-) A-I      intronic
chr15:23075506(-) A-I      intronic
chr15:23076004(-) A-I      intronic
chr15:23070929(-) A-I      intronic
chr15:23077083(-) A-I      intronic
chr15:23060458(-) A-I      intronic
chr15:23064362(-) A-I      intronic
chr15:23054779(-) A-I      intronic
chr15:23069872(-) A-I      intronic
chr15:23072029(-) A-I      intronic
chr15:23056080(-) A-I      intronic
chr15:23083879(-) A-I      intronic
chr15:23064135(-) A-I      intronic
chr15:23067503(-) A-I      intronic
chr15:23079840(-) A-I      intronic
chr15:23079488(-) A-I      intronic
chr15:23056041(-) A-I      intronic
chr15:23049950(-) A-I      intronic
chr15:23071491(-) A-I      intronic
chr15:23080270(-) A-I      intronic
chr15:23079527(-) A-I      intronic
chr15:23071488(-) A-I      intronic
chr15:23064163(-) A-I      intronic
chr15:23064170(-) A-I      intronic
chr15:23074320(-) A-I      intronic
chr15:23057604(-) A-I      intronic
chr15:23063444(-) A-I      intronic
chr15:23083144(-) A-I      intronic
chr15:23075365(-) A-I      intronic
chr15:23068151(-) A-I      intronic
chr15:23065072(-) A-I      intronic
chr15:23075084(-) A-I      intronic
chr15:23068907(-) A-I      intronic
chr15:23067976(-) A-I      intronic
chr15:23075499(-) A-I      intronic
chr15:23049895(-) A-I      intronic
chr15:23083995(-) A-I      intronic
chr15:23058680(-) A-I      intronic
chr15:23058746(-) A-I      intronic
chr15:23084744(-) A-I      intronic
chr15:23056476(-) A-I      intronic
chr15:23063858(-) A-I      intronic
chr15:23072083(-) A-I      intronic
chr15:23072531(-) A-I      intronic
chr15:23063828(-) A-I      intronic
chr15:23079510(-) A-I      intronic
chr15:23084297(-) A-I      intronic
chr15:23080169(-) A-I      intronic
chr15:23067461(-) A-I      intronic
chr15:23055303(-) A-I      intronic
chr15:23055357(-) A-I      intronic
chr15:23081491(-) A-I      intronic
chr15:23083827(-) A-I      intronic
chr15:23056831(-) A-I      intronic
chr15:23081484(-) A-I      intronic
chr15:23067546(-) A-I      intronic
chr15:23063802(-) A-I      intronic
chr15:23076910(-) A-I      intronic
chr15:23056315(-) A-I      intronic
chr15:23068212(-) A-I      intronic
chr15:23080264(-) A-I      intronic
chr15:23056087(-) A-I      intronic
chr15:23075014(-) A-I      intronic
chr15:23050495(-) A-I      intronic
chr15:23071513(-) A-I      intronic
chr15:23070011(-) A-I      intronic
chr15:23050362(-) A-I      intronic
chr15:23054448(-) A-I      intronic
chr15:23063936(-) A-I      intronic
chr15:23084626(-) A-I      intronic
chr15:23067528(-) A-I      intronic
chr15:23074398(-) A-I      intronic
chr15:23083170(-) A-I      intronic
chr15:23073174(-) A-I      intronic
chr15:23063801(-) A-I      intronic
chr15:23079617(-) A-I      intronic
chr15:23080570(-) A-I      intronic
chr15:23068021(-) A-I      intronic
chr15:23073329(-) A-I      intronic
chr15:23050400(-) A-I      intronic
chr15:23065603(-) A-I      intronic
chr15:23080234(-) A-I      intronic
chr15:23076956(-) A-I      intronic
chr15:23069849(-) A-I      intronic
chr15:23055275(-) A-I      intronic
chr15:23080212(-) A-I      intronic
chr15:23084714(-) A-I      intronic
chr15:23070012(-) A-I      intronic
chr15:23067537(-) A-I      intronic
chr15:23049946(-) A-I      intronic
chr15:23050338(-) A-I      intronic
chr15:23067631(-) A-I      intronic
chr15:23060562(-) A-I      intronic
chr15:23054808(-) A-I      intronic
chr15:23071451(-) A-I      intronic
chr15:23065097(-) A-I      intronic
chr15:23056847(-) A-I      intronic
chr15:23056448(-) A-I      intronic
chr15:23073609(-) A-I      intronic
chr15:23071285(-) A-I      intronic
chr15:23071279(-) A-I      intronic
chr15:23065123(-) A-I      intronic
chr15:23055689(-) A-I      intronic
chr15:23082551(-) A-I      intronic
chr15:23071422(-) A-I      intronic
chr15:23049988(-) A-I      intronic
chr15:23060671(-) A-I      intronic
chr15:23083254(-) A-I      intronic
chr15:23074474(-) A-I      intronic
chr15:23063859(-) A-I      intronic
chr15:23072039(-) A-I      intronic
chr15:23070797(-) A-I      intronic
chr15:23079447(-) A-I      intronic
chr15:23076496(-) A-I      intronic
chr15:23067502(-) A-I      intronic
chr15:23056674(-) A-I      intronic
chr15:23084198(-) A-I      intronic
chr15:23084276(-) A-I      intronic
chr15:23058736(-) A-I      intronic
chr15:23083173(-) A-I      intronic
chr15:23080235(-) A-I      intronic
chr15:23068043(-) A-I      intronic
chr15:23073557(-) A-I      intronic
chr15:23079920(-) A-I      intronic
chr15:23080503(-) A-I      intronic
chr15:23056436(-) A-I      intronic
chr15:23079498(-) A-I      intronic
chr15:23083882(-) A-I      intronic
chr15:23070775(-) A-I      intronic
chr15:23083180(-) A-I      intronic
chr15:23076512(-) A-I      intronic
chr15:23075464(-) A-I      intronic
chr15:23074399(-) A-I      intronic
chr15:23079444(-) A-I      intronic
chr15:23077118(-) A-I      intronic
chr15:23065204(-) A-I      intronic
chr15:23073921(-) A-I      intronic
chr15:23056139(-) A-I      intronic
chr15:23056363(-) A-I      intronic
chr15:23060600(-) A-I      intronic
chr15:23076581(-) A-I      intronic
chr15:23056799(-) A-I      intronic
chr15:23083128(-) A-I      intronic
chr15:23081873(-) A-I      intronic
chr15:23074959(-) A-I      intronic
chr15:23057555(-) A-I      intronic
chr15:23076894(-) A-I      intronic
chr15:23056477(-) A-I      intronic
chr15:23068679(-) A-I      intronic
chr15:23071412(-) A-I      intronic
chr15:23075959(-) A-I      intronic
chr15:23058666(-) A-I      intronic
chr15:23074958(-) A-I      intronic
chr15:23079976(-) A-I      intronic
chr15:23054752(-) A-I      intronic
chr15:23064298(-) A-I      intronic
chr15:23082393(-) A-I      intronic
chr15:23084296(-) A-I      intronic
chr15:23049883(-) A-I      intronic
chr15:23079571(-) A-I      intronic
chr15:23065518(-) A-I      intronic
chr15:23083074(-) A-I      intronic
chr15:23084778(-) A-I      intronic
chr15:23055962(-) A-I      intronic
chr15:23080164(-) A-I      intronic
chr15:23055778(-) A-I      intronic
chr15:23080067(-) A-I      intronic
chr15:23070747(-) A-I      intronic
chr15:23063402(-) A-I      intronic
chr15:23077004(-) A-I      intronic
chr15:23054707(-) A-I      intronic
chr15:23076529(-) A-I      intronic
chr15:23065017(-) A-I      intronic
chr15:23067493(-) A-I      intronic
chr15:23084822(-) A-I      intronic
chr15:23084581(-) A-I      intronic
chr15:23063937(-) A-I      intronic
chr15:23063133(-) A-I      intronic
chr15:23056459(-) A-I      intronic
chr15:23082876(-) A-I      intronic
chr15:23084646(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NIPA1
chr15:23083827(-) A-I intron -    15545495
chr15:23083879(-) A-I intron -    15545495
chr15:23083882(-) A-I intron -    15545495
chr15:23084296(-) A-I intron -    22327324
chr15:23049950(-) A-G intron -    22484847
chr15:23054779(-) A-G intron -    22484847
chr15:23055303(-) A-G intron -    22484847
chr15:23055454(-) A-G intron -    22484847
chr15:23055755(-) A-G intron -    22484847
chr15:23055778(-) A-G intron -    22484847
chr15:23055962(-) A-G intron -    22484847
chr15:23056156(-) A-G intron -    22484847
chr15:23056363(-) A-G intron -    22484847
chr15:23056476(-) A-G intron -    22484847
chr15:23056831(-) A-G intron -    22484847
chr15:23057676(-) A-G intron -    22484847
chr15:23057677(-) A-G intron -    22484847
chr15:23060600(-) A-G intron -    22484847
chr15:23064325(-) A-G intron -    22484847
chr15:23070747(-) A-G intron -    22484847
chr15:23070796(-) A-G intron -    22484847
chr15:23070797(-) A-G intron -    22484847
chr15:23073329(-) A-G intron -    22484847
chr15:23076894(-) A-G intron -    22484847
chr15:23077083(-) A-G intron -    22484847
chr15:23083074(-) A-G intron -    22484847
chr15:23084296(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NIPA1
chr15:23043715-23043716(-) m6A 3'UTR       24284625//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr15:23043746-23043747(-) m6A 3'UTR       24284625//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr15:23043782-23043783(-) m6A 3'UTR       24284625//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr15:23043826-23043827(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr15:23043927-23043928(-) m6A 3'UTR       24284625//24981863//27773535//27371828//22608085
chr15:23043933-23043934(-) m6A 3'UTR       24284625//24981863//27773535//27371828//22608085
chr15:23044070-23044071(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22608085
chr15:23044083-23044084(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22608085
chr15:23044102-23044103(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22608085
chr15:23044117-23044118(-) m6A 3'UTR       24981863//27371828//22608085
chr15:23044198-23044199(-) m6A 3'UTR       24981863
chr15:23048226-23048227(-) m6A 3'UTR       27773535
chr15:23048267-23048268(-) m6A 3'UTR       27773535
chr15:23048421-23048422(-) m6A 3'UTR       24981863//27773535
chr15:23048515-23048516(-) m6A 3'UTR       24981863//27773535
chr15:23048534-23048535(-) m6A 3'UTR       24209618//24981863//27773535//27371828
chr15:23048836-23048837(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr15:23048853-23048854(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr15:23048949-23048950(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr15:23049174-23049175(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//26404942//27371828//22575960//22608085
chr15:23086260-23086261(-) m1A CDS//exon//intron       26863196//26863410

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BART19-5p
Exosome B cell line (Raji)     21505438
NIPA1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART19-5p
Interactor2: NIPA1

Evidence Support:


Prediction-Evidence cRep//miRanda//Targetscan
Support Database RepTar//VmiReg

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