Basic Information:

  VIRBase ID:  

VHID00407676

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART19-5p:  MIMAT0004836          ARL14EP:  NM_152316     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART19-5p	ARL14EP
miRBase Accession/Entrez ID	MIMAT0004836	120534
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ARF7EP//C11orf46//dJ299F11.1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ARL14EP	chr11:30349872(+) A-I      intronic chr11:30349889(+) A-I      intronic chr11:30349833(+) A-I      intronic chr11:30349443(+) A-I      intronic chr11:30349863(+) A-I      intronic chr11:30349894(+) A-I      intronic chr11:30349294(+) A-I      intronic chr11:30349885(+) A-I      intronic chr11:30349870(+) A-I      intronic chr11:30349923(+) A-I      intronic chr11:30349810(+) A-I      intronic chr11:30349899(+) A-I      intronic chr11:30349792(+) A-I      intronic chr11:30349766(+) A-I      intronic chr11:30349251(+) A-I      intronic chr11:30349451(+) A-I      intronic chr11:30348781(+) A-I      intronic chr11:30349345(+) A-I      intronic chr11:30349250(+) A-I      intronic chr11:30349339(+) A-I      intronic chr11:30350071(+) A-I      intronic chr11:30349942(+) A-I      intronic chr11:30349796(+) A-I      intronic chr11:30349464(+) A-I      intronic chr11:30349954(+) A-I      intronic chr11:30349791(+) A-I      intronic chr11:30349444(+) A-I      intronic chr11:30351075(+) A-I      intronic chr11:30349927(+) A-I      intronic chr11:30349753(+) A-I      intronic chr11:30349228(+) A-I      intronic chr11:30349835(+) A-I      intronic chr11:30349472(+) A-I      intronic chr11:30349710(+) A-I      intronic chr11:30349860(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ARL14EP	chr11:30344665-30344666(+) m6A 5'UTR       24209618//24981863//22608085 chr11:30344704-30344705(+) m6A 5'UTR//exon       24209618//24981863//22608085 chr11:30352453-30352454(+) m6A 5'UTR//exon       24284625//24209618//24981863//22608085 chr11:30352461-30352462(+) m6A 5'UTR//exon       24284625//24209618//24981863//22608085 chr11:30352552-30352553(+) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085 chr11:30352582-30352583(+) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr11:30352630-30352631(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:30352652-30352653(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr11:30352815-30352816(+) m6A CDS//exon       24284625//24209618//24981863//22608085 chr11:30352892-30352893(+) m6A CDS//exon       24284625//24981863//22608085 chr11:30352908-30352909(+) m6A CDS//exon       24284625//22608085 chr11:30353255-30353256(+) m6A exon//intron       22608085 chr11:30353310-30353311(+) m6A exon//intron       24284625//22608085 chr11:30353336-30353337(+) m6A exon//intron       24284625//22608085 chr11:30354418-30354419(+) m6A CDS//exon       24981863//22608085 chr11:30354466-30354467(+) m6A CDS//exon       24981863//22608085 chr11:30354484-30354485(+) m6A CDS//exon       24284625//24981863//22608085 chr11:30354536-30354537(+) m6A CDS       24284625//24981863//22608085 chr11:30358178-30358179(+) m6A CDS       24284625//24981863//22608085 chr11:30358202-30358203(+) m6A CDS       24284625//24981863//22608085 chr11:30358329-30358330(+) m6A CDS       24981863//22608085 chr11:30358355-30358356(+) m6A 3'UTR       24981863//22608085 chr11:30359029-30359030(+) m6A 3'UTR       24981863 chr11:30359114-30359115(+) m6A 3'UTR       24981863 chr11:30359152-30359153(+) m6A 3'UTR       24981863 chr11:30359192-30359193(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART19-5p	Exosome B cell line (Raji)     21505438
	ARL14EP	Chromatin K562 cells     - Exosome Blood     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART19-5p
Interactor2: ARL14EP

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	cRep//miRanda//PARalyzer//Targetscan
Support Database	RepTar//ViRBase//VIRmiRNA//VmiReg

References:

PMID	22100165	Target region	3'UTR
Source	RepTar//ViRBase//VIRmiRNA//VmiReg	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	None
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.