Basic Information:

  VIRBase ID:  

VHID00407600

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART19-5p:  MIMAT0004836          SYT12:  NM_177963     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART19-5p	SYT12
miRBase Accession/Entrez ID	MIMAT0004836	91683
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SYT11//sytXII

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SYT12	chr11:66794824(+) A-I      intronic chr11:66806390(+) A-I      intronic chr11:66806399(+) A-I      intronic chr11:66806407(+) A-I      intronic chr11:66806413(+) A-I      intronic chr11:66803598(+) A-I      intronic chr11:66794923(+) A-I      intronic chr11:66802598(+) A-I      intronic chr11:66802606(+) A-I      intronic chr11:66804424(+) A-I      intronic chr11:66802610(+) A-I      intronic chr11:66794761(+) A-I      intronic chr11:66803485(+) A-I      intronic chr11:66804953(+) A-I      intronic chr11:66804359(+) A-I      intronic chr11:66807040(+) A-I      intronic chr11:66806826(+) A-I      intronic chr11:66805638(+) A-I      intronic chr11:66807017(+) A-I      intronic chr11:66806978(+) A-I      intronic chr11:66802620(+) A-I      intronic chr11:66794717(+) A-I      intronic chr11:66805669(+) A-I      intronic chr11:66807073(+) A-I      intronic chr11:66794769(+) A-I      intronic chr11:66794716(+) A-I      intronic chr11:66803135(+) A-I      intronic chr11:66803525(+) A-I      intronic chr11:66805451(+) A-I      intronic chr11:66806757(+) A-I      intronic chr11:66805701(+) A-I      intronic chr11:66803650(+) A-I      intronic chr11:66804346(+) A-I      intronic chr11:66805858(+) A-I      intronic chr11:66804298(+) A-I      intronic chr11:66803190(+) A-I      intronic chr11:66815035(+) A-I      intronic chr11:66808055(+) A-I      intronic chr11:66806204(+) A-I      intronic chr11:66803656(+) A-I      intronic chr11:66806231(+) A-I      intronic chr11:66805190(+) A-I      intronic chr11:66805132(+) A-I      intronic chr11:66807068(+) A-I      intronic chr11:66804605(+) A-I      intronic chr11:66805707(+) A-I      intronic chr11:66802561(+) A-I      intronic chr11:66806938(+) A-I      intronic chr11:66806653(+) A-I      intronic chr11:66805915(+) A-I      intronic chr11:66802702(+) A-I      intronic chr11:66805741(+) A-I      intronic chr11:66803623(+) A-I      intronic chr11:66794770(+) A-I      intronic chr11:66805389(+) A-I      intronic chr11:66805909(+) A-I      intronic chr11:66806627(+) A-I      intronic chr11:66805821(+) A-I      intronic chr11:66805795(+) A-I      intronic chr11:66778620(+) A-I      intronic chr11:66803498(+) A-I      intronic chr11:66803455(+) A-I      intronic chr11:66806654(+) A-I      intronic chr11:66805737(+) A-I      intronic chr11:66794152(+) A-I      intronic chr11:66803611(+) A-I      intronic chr11:66793966(+) A-I      intronic chr11:66804433(+) A-I      intronic chr11:66806964(+) A-I      intronic chr11:66805187(+) A-I      intronic chr11:66793965(+) A-I      intronic chr11:66793874(+) A-I      intronic chr11:66788468(+) A-I      intronic chr11:66793964(+) A-I      intronic chr11:66804579(+) A-I      intronic chr11:66794018(+) A-I      intronic chr11:66803622(+) A-I      intronic chr11:66803449(+) A-I      intronic chr11:66794204(+) A-I      intronic chr11:66793910(+) A-I      intronic chr11:66793911(+) A-I      intronic chr11:66804634(+) A-I      intronic chr11:66791812(+) A-I      intronic chr11:66805099(+) A-I      intronic chr11:66806965(+) A-I      intronic chr11:66806866(+) A-I      intronic chr11:66805767(+) A-I      intronic chr11:66805755(+) A-I      intronic chr11:66804910(+) A-I      intronic chr11:66802001(+) A-I      intronic chr11:66805646(+) A-I      intronic chr11:66800901(+) A-I      intronic chr11:66803202(+) A-I      intronic chr11:66806861(+) A-I      intronic chr11:66804311(+) A-I      intronic chr11:66805206(+) A-I      intronic chr11:66806818(+) A-I      intronic chr11:66803515(+) A-I      intronic chr11:66804606(+) A-I      intronic chr11:66803664(+) A-I      intronic chr11:66804157(+) A-I      intronic chr11:66803139(+) A-I      intronic chr11:66793837(+) A-I      intronic chr11:66794738(+) A-I      intronic chr11:66805818(+) A-I      intronic chr11:66802623(+) A-I      intronic chr11:66797091(+) A-I      intronic chr11:66793510(+) A-I      intronic chr11:66800833(+) A-I      intronic chr11:66803417(+) A-I      intronic chr11:66802581(+) A-I      intronic chr11:66806311(+) A-I      intronic chr11:66794941(+) A-I      intronic chr11:66805738(+) A-I      intronic chr11:66806257(+) A-I      intronic chr11:66794708(+) A-I      intronic chr11:66805116(+) A-I      intronic chr11:66806827(+) A-I      intronic chr11:66807064(+) A-I      intronic chr11:66797178(+) A-I      intronic chr11:66814455(+) A-I      intronic chr11:66803662(+) A-I      intronic chr11:66794694(+) A-I      intronic chr11:66797160(+) A-I      intronic chr11:66803649(+) A-I      intronic chr11:66804402(+) A-I      intronic chr11:66806680(+) A-I      intronic chr11:66803466(+) A-I      intronic chr11:66806205(+) A-I      intronic chr11:66805355(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SYT12	chr11:66803135(+) A-I intron -    15545495 chr11:66803139(+) A-I intron -    15545495 chr11:66803193(+) A-I intron -    15545495 chr11:66803202(+) A-I intron -    15545495

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SYT12	chr11:66774560-66774561(+) m6A 5'UTR       - chr11:66774588-66774589(+) m6A 5'UTR       - chr11:66774615-66774616(+) m6A 5'UTR       - chr11:66774670-66774671(+) m6A 5'UTR       - chr11:66774728-66774729(+) m6A 5'UTR       25456834 chr11:66774754-66774755(+) m6A 5'UTR       25456834 chr11:66774762-66774763(+) m6A 5'UTR       25456834 chr11:66774809-66774810(+) m6A 5'UTR       25456834 chr11:66774867-66774868(+) m6A 5'UTR       25456834 chr11:66774903-66774904(+) m6A 5'UTR       - chr11:66774916-66774917(+) m6A 5'UTR       - chr11:66777456-66777457(+) m6A 5'UTR       - chr11:66777508-66777509(+) m6A 5'UTR       24284625 chr11:66777559-66777560(+) m6A 5'UTR       24284625 chr11:66777573-66777574(+) m6A 5'UTR       24284625 chr11:66778303-66778304(+) m6A 5'UTR       - chr11:66778319-66778320(+) m6A 5'UTR       - chr11:66807322-66807323(+) m6A CDS//exon       24284625//25456834//24981863//22575960 chr11:66807357-66807358(+) m6A CDS//exon       24284625//25456834//24981863//22575960 chr11:66807379-66807380(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960 chr11:66807414-66807415(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960 chr11:66807431-66807432(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960 chr11:66807465-66807466(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960 chr11:66807501-66807502(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960 chr11:66807585-66807586(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960 chr11:66813270-66813271(+) m6A CDS       24284625 chr11:66816106-66816107(+) m6A CDS       24284625//22575960 chr11:66816153-66816154(+) m6A CDS       24284625//24981863//22575960 chr11:66816166-66816167(+) m6A CDS       24284625//24981863//22575960 chr11:66816223-66816224(+) m6A CDS       24284625//25456834//24981863//22575960 chr11:66816324-66816325(+) m6A 3'UTR       24284625//25456834//24981863//22575960 chr11:66816440-66816441(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr11:66816461-66816462(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr11:66816468-66816469(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr11:66816522-66816523(+) m6A 3'UTR       24284625//25456834//24981863//22575960 chr11:66816583-66816584(+) m6A 3'UTR       24284625//25456834//24981863//22575960 chr11:66816608-66816609(+) m6A 3'UTR       24284625//25456834//24981863//22575960 chr11:66816665-66816666(+) m6A 3'UTR       24284625//25456834//24981863//22575960 chr11:66816692-66816693(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr11:66816747-66816748(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr11:66816798-66816799(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr11:66816875-66816876(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr11:66816883-66816884(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr11:66816918-66816919(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr11:66816960-66816961(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr11:66816978-66816979(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr11:66817001-66817002(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr11:66817031-66817032(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr11:66817042-66817043(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr11:66817192-66817193(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr11:66817238-66817239(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr11:66817317-66817318(+) m6A 3'UTR       24284625//24209618//25456834//22575960 chr11:66817466-66817467(+) m6A 3'UTR       - chr11:66817936-66817937(+) m6A 3'UTR       24284625 chr11:66817951-66817952(+) m6A 3'UTR       24284625 chr11:66818059-66818060(+) m6A 3'UTR       24284625 chr11:66818071-66818072(+) m6A 3'UTR       24284625 chr11:66818093-66818094(+) m6A 3'UTR       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART19-5p	Exosome B cell line (Raji)     21505438
	SYT12	Exosome Blood     - Nucleolus K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART19-5p
Interactor2: SYT12

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg