Detail Information

Basic Information:


  VIRBase ID:  

VHID00406943

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART19-5p:           YTHDF1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART19-5p YTHDF1
miRBase
Accession/Entrez ID		 MIMAT0004836 54915
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - C20orf21

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR YTHDF1
chr20:61847075(-) A-I      intronic
chr20:61836999(-) A-I      intronic
chr20:61837031(-) A-I      intronic
chr20:61837065(-) A-I      intronic
chr20:61837134(-) A-I      intronic
chr20:61838577(-) A-I      intronic
chr20:61838699(-) A-I      intronic
chr20:61838709(-) A-I      intronic
chr20:61838815(-) A-I      intronic
chr20:61839194(-) A-I      intronic
chr20:61836895(-) A-I      intronic
chr20:61836933(-) A-I      intronic
chr20:61839339(-) A-I      intronic
chr20:61837028(-) A-I      intronic
chr20:61843278(-) A-I      intronic
chr20:61839260(-) A-I      intronic
chr20:61839178(-) A-I      intronic
chr20:61838631(-) A-I      intronic
chr20:61830759(-) A-I      intronic
chr20:61837059(-) A-I      intronic
chr20:61838673(-) A-I      intronic
chr20:61837133(-) A-I      intronic
chr20:61838576(-) A-I      intronic
chr20:61839221(-) A-I      intronic
chr20:61843109(-) A-I      intronic
chr20:61841970(-) A-I      intronic
chr20:61836989(-) A-I      intronic
chr20:61838591(-) A-I      intronic
chr20:61837064(-) A-I      intronic
chr20:61839114(-) A-I      intronic
chr20:61836957(-) A-I      intronic
chr20:61838654(-) A-I      intronic
chr20:61842566(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase YTHDF1
chr20:61826797-61826798(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr20:61826867-61826868(-) m6A 3'UTR       24284625//24981863//28052920//27773535//22608085
chr20:61826898-61826899(-) m6A 3'UTR       24284625//24981863//28052920//27773535//22575960//22608085
chr20:61826932-61826933(-) m6A 3'UTR       24284625//24981863//28052920//26404942//27773535//22575960//22608085
chr20:61826949-61826950(-) m6A 3'UTR       24284625//24981863//28052920//26404942//27773535//22575960//22608085
chr20:61827085-61827086(-) m6A 3'UTR       24284625//26404942//27773535//22608085
chr20:61827132-61827133(-) m6A 3'UTR       24284625//26404942
chr20:61827137-61827138(-) m6A 3'UTR       24284625
chr20:61827142-61827143(-) m6A 3'UTR       24284625
chr20:61827823-61827824(-) m6A 3'UTR       -
chr20:61828005-61828006(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr20:61828015-61828016(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr20:61828052-61828053(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr20:61828069-61828070(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr20:61833771-61833772(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:61833780-61833781(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:61833791-61833792(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:61833888-61833889(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:61833921-61833922(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:61834026-61834027(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr20:61834181-61834182(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:61834315-61834316(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr20:61834482-61834483(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:61834543-61834544(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:61834562-61834563(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:61834617-61834618(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr20:61834627-61834628(-) m6A CDS//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr20:61834749-61834750(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr20:61834867-61834868(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr20:61834891-61834892(-) m6A CDS//intron       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr20:61834914-61834915(-) m6A CDS//intron       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr20:61834953-61834954(-) m6A CDS//intron       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr20:61835004-61835005(-) m6A CDS//intron       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:61835021-61835022(-) m6A CDS//intron       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr20:61835052-61835053(-) m6A CDS//intron       24284625//24209618//24981863//28052920//26404942//27773535//22608085
chr20:61839838-61839839(-) m6A intron       24284625//24209618//27773535
chr20:61839851-61839852(-) m6A intron       24284625//24209618//27773535
chr20:61839911-61839912(-) m6A intron       24209618//27773535
chr20:61839935-61839936(-) m6A intron       24209618//27773535
chr20:61845227-61845228(-) m6A CDS       24209618
chr20:61846941-61846942(-) m6A CDS       24209618
chr20:61846949-61846950(-) m6A CDS       24209618
chr20:61847224-61847225(-) m6A CDS       24209618

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BART19-5p
Exosome B cell line (Raji)     21505438
YTHDF1
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART19-5p
Interactor2: YTHDF1

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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