Basic Information:

  VIRBase ID:  

VHID00406876

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART19-5p:  MIMAT0004836          PRR13:  NM_018457     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART19-5p	PRR13
miRBase Accession/Entrez ID	MIMAT0004836	54458
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	TXR1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PRR13	chr12:53838981(+) A-I      intronic chr12:53838975(+) A-I      intronic chr12:53838969(+) A-I      intronic chr12:53838916(+) A-I      intronic chr12:53838938(+) A-I      intronic chr12:53838977(+) A-I      intronic chr12:53838971(+) A-I      intronic chr12:53838207(+) A-I      intronic chr12:53839102(+) A-I      intronic chr12:53839038(+) A-I      intronic chr12:53838970(+) A-I      intronic chr12:53838927(+) A-I      intronic chr12:53839073(+) A-I      intronic chr12:53839017(+) A-I      intronic chr12:53838874(+) A-I      intronic chr12:53838253(+) A-I      intronic chr12:53839051(+) A-I      intronic chr12:53838162(+) A-I      intronic chr12:53838320(+) A-I      intronic chr12:53838177(+) A-I      intronic chr12:53838584(+) A-I      intronic chr12:53838933(+) A-I      intronic chr12:53838178(+) A-I      intronic chr12:53838676(+) A-I      intronic chr12:53838243(+) A-I      intronic chr12:53838490(+) A-I      intronic chr12:53839077(+) A-I      intronic chr12:53839061(+) A-I      intronic chr12:53838561(+) A-I      intronic chr12:53838943(+) A-I      intronic chr12:53838575(+) A-I      intronic chr12:53839081(+) A-I      intronic chr12:53838980(+) A-I      intronic chr12:53838985(+) A-I      intronic chr12:53838603(+) A-I      intronic chr12:53838614(+) A-I      intronic chr12:53839087(+) A-I      intronic chr12:53838993(+) A-I      intronic chr12:53839012(+) A-I      intronic chr12:53836821(+) A-I      intronic chr12:53838444(+) A-I      intronic chr12:53838571(+) A-I      intronic chr12:53839339(+) A-I      intronic chr12:53838664(+) A-I      intronic chr12:53838518(+) A-I      intronic chr12:53838497(+) A-I      intronic chr12:53838627(+) A-I      intronic chr12:53838932(+) A-I      intronic chr12:53838562(+) A-I      intronic chr12:53839021(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PRR13	chr12:53838971(+) A-I intron -    21960545 chr12:53836225(+) C-A intron -    22484847 chr12:53838497(+) A-G intron -    22484847 chr12:53838562(+) A-G intron -    22484847 chr12:53838571(+) A-G intron -    22484847 chr12:53838603(+) A-G intron -    22484847 chr12:53838614(+) A-G intron -    22484847 chr12:53838943(+) A-G intron -    22484847 chr12:53838980(+) A-G intron -    22484847 chr12:53839012(+) A-G intron -    22484847 chr12:53839081(+) A-G intron -    22484847 chr12:53838490(+) A-G intron -    22484847 chr12:53838561(+) A-G intron -    22484847 chr12:53838575(+) A-G intron -    22484847 chr12:53839021(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PRR13	chr12:53835414-53835415(+) m6A 5'UTR       24981863 chr12:53835534-53835535(+) m6A 5'UTR//exon       24284625//25456834//24981863 chr12:53836335-53836336(+) m6A exon//intron       24284625//25456834//24981863 chr12:53836486-53836487(+) m6A 5'UTR//CDS//exon       24284625//25456834//24981863//27773535 chr12:53836496-53836497(+) m6A 5'UTR//CDS//exon       24284625//25456834//24981863//27773535//27371828 chr12:53837003-53837004(+) m6A exon//intron       24981863 chr12:53837224-53837225(+) Y CDS//intron       25219674//26075521 chr12:53837454-53837455(+) m6A CDS//intron       24284625//24209618//24981863//27773535 chr12:53837471-53837472(+) m6A CDS       24284625//24209618//24981863//27773535 chr12:53837574-53837575(+) m6A CDS//intron       24284625//24981863//27773535 chr12:53837606-53837607(+) m6A CDS//intron       24284625//24981863//27773535 chr12:53837837-53837838(+) m6A 3'UTR//intron       24981863 chr12:53839856-53839857(+) m6A 3'UTR       24284625//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART19-5p	Exosome B cell line (Raji)     21505438
	PRR13	Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART19-5p
Interactor2: PRR13

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg