Basic Information:

  VIRBase ID:  

VHID00406671

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART19-5p:  MIMAT0004836          NECAP1:  NR_024260     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART19-5p	NECAP1
miRBase Accession/Entrez ID	MIMAT0004836	25977
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DEE21//EIEE21

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NECAP1	chr12:7950921(+) A-I      intronic chr12:7950796(+) A-I      intronic chr12:7950744(+) A-I      intronic chr12:7950797(+) A-I      intronic chr12:7948760(+) A-I      intronic chr12:7950888(+) A-I      intronic chr12:7950523(+) A-I      intronic chr12:8018603(+) A-I      intronic chr12:8018612(+) A-I      intronic chr12:8018657(+) A-I      intronic chr12:8018655(+) A-I      intronic chr12:7950922(+) A-I      intronic chr12:8018651(+) A-I      intronic chr12:7953166(+) A-I      intronic chr12:7953167(+) A-I      intronic chr12:7950853(+) A-I      intronic chr12:8018634(+) A-I      intronic chr12:8018626(+) A-I      intronic chr12:7950740(+) A-I      intronic chr12:7950695(+) A-I      intronic chr12:7950711(+) A-I      intronic chr12:7950862(+) A-I      intronic chr12:7950484(+) A-I      intronic chr12:7950463(+) A-I      intronic chr12:7950432(+) A-I      intronic chr12:7948836(+) A-I      intronic chr12:7950717(+) A-I      intronic chr12:7950718(+) A-I      intronic chr12:7950739(+) A-I      intronic chr12:7950379(+) A-I      intronic chr12:7950377(+) A-I      intronic chr12:7950376(+) A-I      intronic chr12:7950221(+) A-I      intronic chr12:7950133(+) A-I      intronic chr12:7950054(+) A-I      intronic chr12:7949984(+) A-I      intronic chr12:7950795(+) A-I      intronic chr12:7949337(+) A-I      intronic chr12:7949338(+) A-I      intronic chr12:8238339(+) A-I      intronic chr12:8239388(+) A-I      intronic chr12:8239372(+) A-I      intronic chr12:8239346(+) A-I      intronic chr12:8143243(+) A-I      intronic chr12:8143219(+) A-I      intronic chr12:8247259(+) A-I      intronic chr12:8239276(+) A-I      intronic chr12:7931610(+) A-I      intronic chr12:8180293(+) A-I      intronic chr12:8238953(+) A-I      intronic chr12:8239479(+) A-I      intronic chr12:8166331(+) A-I      intronic chr12:8166334(+) A-I      intronic chr12:8248051(+) A-I      intronic chr12:7927602(+) A-I      intronic chr12:8243257(+) A-I      intronic chr12:8220509(+) A-I      intronic chr12:8141124(+) A-I      intronic chr12:8152750(+) A-I      intronic chr12:8056326(+) A-I      intronic chr12:8137852(+) A-I      intronic chr12:8238954(+) A-I      intronic chr12:8246152(+) A-I      intronic chr12:8247086(+) A-I      intronic chr12:8148729(+) A-I      intronic chr12:8131662(+) A-I      intronic chr12:8247116(+) A-I      intronic chr12:8127554(+) A-I      intronic chr12:8246289(+) A-I      intronic chr12:8239083(+) A-I      intronic chr12:8239477(+) A-I      intronic chr12:8164702(+) A-I      intronic chr12:8130711(+) A-I      intronic chr12:8127536(+) A-I      intronic chr12:8246214(+) A-I      intronic chr12:8184098(+) A-I      intronic chr12:8247325(+) A-I      intronic chr12:8246265(+) A-I      intronic chr12:8057011(+) A-I      intronic chr12:8239089(+) A-I      intronic chr12:8109756(+) A-I      intronic chr12:8122561(+) A-I      intronic chr12:8246204(+) A-I      intronic chr12:8143387(+) A-I      intronic chr12:8247132(+) A-I      intronic chr12:8243163(+) A-I      intronic chr12:8117509(+) A-I      intronic chr12:8246172(+) A-I      intronic chr12:8145724(+) A-I      intronic chr12:8238947(+) A-I      intronic chr12:8246178(+) A-I      intronic chr12:8096745(+) A-I      intronic chr12:8246284(+) A-I      intronic chr12:8109724(+) A-I      intronic chr12:8121019(+) A-I      intronic chr12:8127038(+) A-I      intronic chr12:8109716(+) A-I      intronic chr12:8148712(+) A-I      intronic chr12:8137827(+) A-I      intronic chr12:8246169(+) A-I      intronic chr12:8136615(+) A-I      intronic chr12:8137841(+) A-I      intronic chr12:8163716(+) A-I      intronic chr12:8149332(+) A-I      intronic chr12:8148728(+) A-I      intronic chr12:8122576(+) A-I      intronic chr12:8238449(+) A-I      intronic chr12:8247111(+) A-I      intronic chr12:8246137(+) A-I      intronic chr12:8243408(+) A-I      intronic chr12:8238429(+) A-I      intronic chr12:8236082(+) A-I      intronic chr12:8246196(+) A-I      intronic chr12:8126327(+) A-I      intronic chr12:8246067(+) A-I      intronic chr12:8128342(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	NECAP1	chr12:8238947(+) A-G intron -    22484847 chr12:8236082(+) A-G intron -    22484847 chr12:8239477(+) A-G intron -    22484847 chr12:8247116(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NECAP1	chr12:8234877-8234878(+) m6A 5'UTR//exon       24981863 chr12:8245506-8245507(+) m6A 3'UTR//CDS//exon       - chr12:8248280-8248281(+) m6A 3'UTR//CDS//exon       - chr12:8248700-8248701(+) m6A 3'UTR//exon       24981863//27773535 chr12:8248709-8248710(+) m6A 3'UTR//exon       24981863//27773535 chr12:8248766-8248767(+) m6A 3'UTR//exon       24981863 chr12:8248784-8248785(+) m6A 3'UTR//exon       24981863 chr12:8248798-8248799(+) m6A 3'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART19-5p	Exosome B cell line (Raji)     21505438
	NECAP1	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART19-5p
Interactor2: NECAP1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg