Basic Information:

  VIRBase ID:  

VHID00406555

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART19-5p:  MIMAT0004836          ARL6IP1:  NM_015161     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART19-5p	ARL6IP1
miRBase Accession/Entrez ID	MIMAT0004836	23204
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	AIP1//ARL6IP//ARMER//SPG61

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ARL6IP1	chr16:18810528(-) A-I      intronic chr16:18805412(-) A-I      intronic chr16:18811347(-) A-I      intronic chr16:18810571(-) A-I      intronic chr16:18811344(-) A-I      intronic chr16:18806488(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ARL6IP1	chr16:18803028-18803029(-) Y 3'UTR       25219674 chr16:18803373-18803374(-) m6A 3'UTR       26404942 chr16:18804355-18804356(-) m6A 3'UTR       22575960 chr16:18804433-18804434(-) m6A 3'UTR       22575960 chr16:18810129-18810130(-) m6A 5'UTR//CDS//exon       22575960 chr16:18810146-18810147(-) m6A 5'UTR//CDS//exon       22575960 chr16:18812583-18812584(-) m6A 5'UTR//intron       22575960 chr16:18812804-18812805(-) m6A 5'UTR//exon       22575960 chr16:18812836-18812837(-) m6A 5'UTR//exon       22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART19-5p	Exosome B cell line (Raji)     21505438
	ARL6IP1	Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART19-5p
Interactor2: ARL6IP1

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	PARalyzer
Support Database	ViRBase//VIRmiRNA

References:

PMID	22100165	Target region	3'UTR
Source	ViRBase//VIRmiRNA	Interactor1 expression	None
Tissue or cell line	BC-1 cells	Interactor2 expression	None
Description	Using PAR-CLIP, a technology which allows the direct and transcriptome-wide identification of miRNA targets, we delineate the target sites for all viral and cellular miRNAs expressed in PEL cell lines. The resulting data set revealed that KSHV miRNAs directly target more than 2000 cellular mRNAs, including many involved in pathways relevant to KSHV pathogenesis. Moreover, 58% of these mRNAs are also targeted by EBV miRNAs, via distinct binding sites.Clusters with seed matches to expressed miRNAs were considered candidate target sites. Of the clusters mapping to human 3'UTRs, 69% (BC-1) and 70% (BC-3) had seed matches to expressed miRNAs (Tables S6).Table S6A BC-1 derived 3'UTR clusters with seed matches to expressed miRNAs.