Detail Information

Basic Information:


  VIRBase ID:  

VHID00406538

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART19-5p:           RAP1GAP2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART19-5p RAP1GAP2
miRBase
Accession/Entrez ID		 MIMAT0004836 23108
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - GARNL4//RAP1GA3

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RAP1GAP2
chr17:2891436(+) A-I      intronic
chr17:2892739(+) A-I      intronic
chr17:2892827(+) A-I      intronic
chr17:2737984(+) A-I      intronic
chr17:2737970(+) A-I      intronic
chr17:2737952(+) A-I      intronic
chr17:2737940(+) A-I      intronic
chr17:2776498(+) A-I      intronic
chr17:2777346(+) A-I      intronic
chr17:2782490(+) A-I      intronic
chr17:2775410(+) A-I      intronic
chr17:2816459(+) A-I      intronic
chr17:2734605(+) A-I      intronic
chr17:2733681(+) A-I      intronic
chr17:2733579(+) A-I      intronic
chr17:2727723(+) A-I      intronic
chr17:2816437(+) A-I      intronic
chr17:2816262(+) A-I      intronic
chr17:2816243(+) A-I      intronic
chr17:2891383(+) A-I      intronic
chr17:2775397(+) A-I      intronic
chr17:2890772(+) A-I      intronic
chr17:2890785(+) A-I      intronic
chr17:2775433(+) A-I      intronic
chr17:2775449(+) A-I      intronic
chr17:2890889(+) A-I      intronic
chr17:2883335(+) A-I      intronic
chr17:2883352(+) A-I      intronic
chr17:2776009(+) A-I      intronic
chr17:2736218(+) A-I      intronic
chr17:2736537(+) A-I      intronic
chr17:2736554(+) A-I      intronic
chr17:2736566(+) A-I      intronic
chr17:2740464(+) A-I      intronic
chr17:2744037(+) A-I      intronic
chr17:2727529(+) A-I      intronic
chr17:2890917(+) A-I      intronic
chr17:2896448(+) A-I      intronic
chr17:2744064(+) A-I      intronic
chr17:2744171(+) A-I      intronic
chr17:2775308(+) A-I      intronic
chr17:2775352(+) A-I      intronic
chr17:2775361(+) A-I      intronic
chr17:2890676(+) A-I      intronic
chr17:2842408(+) A-I      intronic
chr17:2903012(+) A-I      intronic
chr17:2915831(+) A-I      intronic
chr17:2915833(+) A-I      intronic
chr17:2727513(+) A-I      intronic
chr17:2727736(+) A-I      intronic
chr17:2846783(+) A-I      intronic
chr17:2882063(+) A-I      intronic
chr17:2775387(+) A-I      intronic
chr17:2775388(+) A-I      intronic
chr17:2865435(+) A-I      intronic
chr17:2878458(+) A-I      intronic
chr17:2734452(+) A-I      intronic
chr17:2709816(+) A-I      intronic
chr17:2775429(+) A-I      intronic
chr17:2801442(+) A-I      intronic
chr17:2878456(+) A-I      intronic
chr17:2882212(+) A-I      intronic
chr17:2873389(+) A-I      intronic
chr17:2775303(+) A-I      intronic
chr17:2749804(+) A-I      intronic
chr17:2784496(+) A-I      intronic
chr17:2732530(+) A-I      intronic
chr17:2878439(+) A-I      intronic
chr17:2739821(+) A-I      intronic
chr17:2733160(+) A-I      intronic
chr17:2896458(+) A-I      intronic
chr17:2716275(+) A-I      intronic
chr17:2730327(+) A-I      intronic
chr17:2726248(+) A-I      intronic
chr17:2878413(+) A-I      intronic
chr17:2850235(+) A-I      intronic
chr17:2801308(+) A-I      intronic
chr17:2726231(+) A-I      intronic
chr17:2880792(+) A-I      intronic
chr17:2766093(+) A-I      intronic
chr17:2764027(+) A-I      intronic
chr17:2743320(+) A-I      intronic
chr17:2737994(+) A-I      intronic
chr17:2873072(+) A-I      intronic
chr17:2776193(+) A-I      intronic
chr17:2716274(+) A-I      intronic
chr17:2850223(+) A-I      intronic
chr17:2716236(+) A-I      intronic
chr17:2842134(+) A-I      intronic
chr17:2725661(+) A-I      intronic
chr17:2850229(+) A-I      intronic
chr17:2878417(+) A-I      intronic
chr17:2749822(+) A-I      intronic
chr17:2726260(+) A-I      intronic
chr17:2776529(+) A-I      intronic
chr17:2812235(+) A-I      intronic
chr17:2705933(+) A-I      intronic
chr17:2874268(+) A-I      intronic
chr17:2821292(+) A-I      intronic
chr17:2773463(+) A-I      intronic
chr17:2753979(+) A-I      intronic
chr17:2784147(+) A-I      intronic
chr17:2864309(+) A-I      intronic
chr17:2749270(+) A-I      intronic
chr17:2736182(+) A-I      intronic
chr17:2776033(+) A-I      intronic
chr17:2753989(+) A-I      intronic
chr17:2770417(+) A-I      intronic
chr17:2719732(+) A-I      intronic
chr17:2776678(+) A-I      intronic
chr17:2776372(+) A-I      intronic
chr17:2788457(+) A-I      intronic
chr17:2776622(+) A-I      intronic
chr17:2896405(+) A-I      intronic
chr17:2725664(+) A-I      intronic
chr17:2895158(+) A-I      intronic
chr17:2776544(+) A-I      intronic
chr17:2777157(+) A-I      intronic
chr17:2770378(+) A-I      intronic
chr17:2782593(+) A-I      intronic
chr17:2821744(+) A-I      intronic
chr17:2730245(+) A-I      intronic
chr17:2766176(+) A-I      intronic
chr17:2891405(+) A-I      intronic
chr17:2729563(+) A-I      intronic
chr17:2762588(+) A-I      intronic
chr17:2897228(+) A-I      intronic
chr17:2770456(+) A-I      intronic
chr17:2723846(+) A-I      intronic
chr17:2704244(+) A-I      intronic
chr17:2797361(+) A-I      intronic
chr17:2778441(+) A-I      intronic
chr17:2747588(+) A-I      intronic
chr17:2919000(+) A-I      intronic
chr17:2847189(+) A-I      intronic
chr17:2719731(+) A-I      intronic
chr17:2725776(+) A-I      intronic
chr17:2812101(+) A-I      intronic
chr17:2733993(+) A-I      intronic
chr17:2707112(+) A-I      intronic
chr17:2838729(+) A-I      intronic
chr17:2738011(+) A-I      intronic
chr17:2816216(+) A-I      intronic
chr17:2734436(+) A-I      intronic
chr17:2922276(+) A-I      intronic
chr17:2762505(+) A-I      intronic
chr17:2725772(+) A-I      intronic
chr17:2770468(+) A-I      intronic
chr17:2725688(+) A-I      intronic
chr17:2779349(+) A-I      intronic
chr17:2733451(+) A-I      intronic
chr17:2895328(+) A-I      intronic
chr17:2742476(+) A-I      intronic
chr17:2764097(+) A-I      intronic
chr17:2924894(+) A-I      intronic
chr17:2777137(+) A-I      intronic
chr17:2776665(+) A-I      intronic
chr17:2903059(+) A-I      intronic
chr17:2779288(+) A-I      intronic
chr17:2749389(+) A-I      intronic
chr17:2830044(+) A-I      intronic
chr17:2778544(+) A-I      intronic
chr17:2727729(+) A-I      intronic
chr17:2821284(+) A-I      intronic
chr17:2776078(+) A-I      intronic
chr17:2764122(+) A-I      intronic
chr17:2762523(+) A-I      intronic
chr17:2873447(+) A-I      intronic
chr17:2738032(+) A-I      intronic
chr17:2716528(+) A-I      intronic
chr17:2775452(+) A-I      intronic
chr17:2735312(+) A-I      intronic
chr17:2918858(+) A-I      intronic
chr17:2928393(+) A-I      intronic
chr17:2762050(+) A-I      intronic
chr17:2779309(+) A-I      intronic
chr17:2776414(+) A-I      intronic
chr17:2782867(+) A-I      intronic
chr17:2782610(+) A-I      intronic
chr17:2740359(+) A-I      intronic
chr17:2736179(+) A-I      intronic
chr17:2835952(+) A-I      intronic
chr17:2724303(+) A-I      intronic
chr17:2928524(+) A-I      intronic
chr17:2790644(+) A-I      intronic
chr17:2766171(+) A-I      intronic
chr17:2776711(+) A-I      intronic
chr17:2779371(+) A-I      intronic
chr17:2782575(+) A-I      intronic
chr17:2891445(+) A-I      intronic
chr17:2737890(+) A-I      intronic
chr17:2729355(+) A-I      intronic
chr17:2725660(+) A-I      intronic
chr17:2733450(+) A-I      intronic
chr17:2778409(+) A-I      intronic
chr17:2739742(+) A-I      intronic
chr17:2716621(+) A-I      intronic
chr17:2729414(+) A-I      intronic
chr17:2796609(+) A-I      intronic
chr17:2864391(+) A-I      intronic
chr17:2754343(+) A-I      intronic
chr17:2778500(+) A-I      intronic
chr17:2724120(+) A-I      intronic
chr17:2842212(+) A-I      intronic
chr17:2754340(+) A-I      intronic
chr17:2922192(+) A-I      intronic
chr17:2821452(+) A-I      intronic
chr17:2846812(+) A-I      intronic
chr17:2739822(+) A-I      intronic
chr17:2823229(+) A-I      intronic
chr17:2746684(+) A-I      intronic
chr17:2767095(+) A-I      intronic
chr17:2776658(+) A-I      intronic
chr17:2738976(+) A-I      intronic
chr17:2728370(+) A-I      intronic
chr17:2763998(+) A-I      intronic
chr17:2766106(+) A-I      intronic
chr17:2733861(+) A-I      intronic
chr17:2812117(+) A-I      intronic
chr17:2743638(+) A-I      intronic
chr17:2777344(+) A-I      intronic
chr17:2801315(+) A-I      intronic
chr17:2761208(+) A-I      intronic
chr17:2795301(+) A-I      intronic
chr17:2725652(+) A-I      intronic
chr17:2736611(+) A-I      intronic
chr17:2706926(+) A-I      intronic
chr17:2872889(+) A-I      intronic
chr17:2726287(+) A-I      intronic
chr17:2845116(+) A-I      intronic
chr17:2795352(+) A-I      intronic
chr17:2892895(+) A-I      intronic
chr17:2733220(+) A-I      intronic
chr17:2894158(+) A-I      intronic
chr17:2801332(+) A-I      intronic
chr17:2873007(+) A-I      intronic
chr17:2902986(+) A-I      intronic
chr17:2726254(+) A-I      intronic
chr17:2762023(+) A-I      intronic
chr17:2860311(+) A-I      intronic
chr17:2820587(+) A-I      intronic
chr17:2773540(+) A-I      intronic
chr17:2782899(+) A-I      intronic
chr17:2733597(+) A-I      intronic
chr17:2922660(+) A-I      intronic
chr17:2736705(+) A-I      intronic
chr17:2744329(+) A-I      intronic
chr17:2730179(+) A-I      intronic
chr17:2902985(+) A-I      intronic
chr17:2744807(+) A-I      intronic
chr17:2846838(+) A-I      intronic
chr17:2874314(+) A-I      intronic
chr17:2789567(+) A-I      intronic
chr17:2837592(+) A-I      intronic
chr17:2776130(+) A-I      intronic
chr17:2775327(+) A-I      intronic
chr17:2865434(+) A-I      intronic
chr17:2864390(+) A-I      intronic
chr17:2713964(+) A-I      intronic
chr17:2729404(+) A-I      intronic
chr17:2873406(+) A-I      intronic
chr17:2705794(+) A-I      intronic
chr17:2775355(+) A-I      intronic
chr17:2778541(+) A-I      intronic
chr17:2715107(+) A-I      intronic
chr17:2882131(+) A-I      intronic
chr17:2724763(+) A-I      intronic
chr17:2776077(+) A-I      intronic
chr17:2829375(+) A-I      intronic
chr17:2724750(+) A-I      intronic
chr17:2740362(+) A-I      intronic
chr17:2744737(+) A-I      intronic
chr17:2900309(+) A-I      intronic
chr17:2860245(+) A-I      intronic
chr17:2744831(+) A-I      intronic
chr17:2776140(+) A-I      intronic
chr17:2905454(+) A-I      intronic
chr17:2729416(+) A-I      intronic
chr17:2800517(+) A-I      intronic
chr17:2717176(+) A-I      intronic
chr17:2766212(+) A-I      intronic
chr17:2906443(+) A-I      intronic
chr17:2737853(+) A-I      intronic
chr17:2845118(+) A-I      intronic
chr17:2924846(+) A-I      intronic
chr17:2749486(+) A-I      intronic
chr17:2814100(+) A-I      intronic
chr17:2903517(+) A-I      intronic
chr17:2705894(+) A-I      intronic
chr17:2733522(+) A-I      intronic
chr17:2724116(+) A-I      intronic
chr17:2718123(+) A-I      intronic
chr17:2892807(+) A-I      intronic
chr17:2722588(+) A-I      intronic
chr17:2821193(+) A-I      intronic
chr17:2925311(+) A-I      intronic
chr17:2928060(+) A-I      intronic
chr17:2729375(+) A-I      intronic
chr17:2837648(+) A-I      intronic
chr17:2707136(+) A-I      intronic
chr17:2873312(+) A-I      intronic
chr17:2736614(+) A-I      intronic
chr17:2925384(+) A-I      intronic
chr17:2750123(+) A-I      intronic
chr17:2740489(+) A-I      intronic
chr17:2782479(+) A-I      intronic
chr17:2739881(+) A-I      intronic
chr17:2744973(+) A-I      intronic
chr17:2892084(+) A-I      intronic
chr17:2726230(+) A-I      intronic
chr17:2741107(+) A-I      intronic
chr17:2722452(+) A-I      intronic
chr17:2746666(+) A-I      intronic
chr17:2891308(+) A-I      intronic
chr17:2782509(+) A-I      intronic
chr17:2725854(+) A-I      intronic
chr17:2887376(+) A-I      intronic
chr17:2707052(+) A-I      intronic
chr17:2874271(+) A-I      intronic
chr17:2872962(+) A-I      intronic
chr17:2865697(+) A-I      intronic
chr17:2754207(+) A-I      intronic
chr17:2767096(+) A-I      intronic
chr17:2846337(+) A-I      intronic
chr17:2816349(+) A-I      intronic
chr17:2925437(+) A-I      intronic
chr17:2723310(+) A-I      intronic
chr17:2816198(+) A-I      intronic
chr17:2821690(+) A-I      intronic
chr17:2743313(+) A-I      intronic
chr17:2776689(+) A-I      intronic
chr17:2708729(+) A-I      intronic
chr17:2927656(+) A-I      intronic
chr17:2782873(+) A-I      intronic
chr17:2924829(+) A-I      intronic
chr17:2762847(+) A-I      intronic
chr17:2896610(+) A-I      intronic
chr17:2743895(+) A-I      intronic
chr17:2780924(+) A-I      intronic
chr17:2925335(+) A-I      intronic
chr17:2776694(+) A-I      intronic
chr17:2717041(+) A-I      intronic
chr17:2785769(+) A-I      intronic
chr17:2777332(+) A-I      intronic
chr17:2776010(+) A-I      intronic
chr17:2733622(+) A-I      intronic
chr17:2729374(+) A-I      intronic
chr17:2847188(+) A-I      intronic
chr17:2777186(+) A-I      intronic
chr17:2775312(+) A-I      intronic
chr17:2770470(+) A-I      intronic
chr17:2727656(+) A-I      intronic
chr17:2766077(+) A-I      intronic
chr17:2735322(+) A-I      intronic
chr17:2873060(+) A-I      intronic
chr17:2725189(+) A-I      intronic
chr17:2746680(+) A-I      intronic
chr17:2777196(+) A-I      intronic
chr17:2782868(+) A-I      intronic
chr17:2774395(+) A-I      intronic
chr17:2847354(+) A-I      intronic
chr17:2835344(+) A-I      intronic
chr17:2925379(+) A-I      intronic
chr17:2869947(+) A-I      intronic
chr17:2782607(+) A-I      intronic
chr17:2739940(+) A-I      intronic
chr17:2728263(+) A-I      intronic
chr17:2723829(+) A-I      intronic
chr17:2776719(+) A-I      intronic
chr17:2730207(+) A-I      intronic
chr17:2716352(+) A-I      intronic
chr17:2728489(+) A-I      intronic
chr17:2856593(+) A-I      intronic
chr17:2766177(+) A-I      intronic
chr17:2776654(+) A-I      intronic
chr17:2762096(+) A-I      intronic
chr17:2880372(+) A-I      intronic
chr17:2733181(+) A-I      intronic
chr17:2904930(+) A-I      intronic
chr17:2891469(+) A-I      intronic
chr17:2776277(+) A-I      intronic
chr17:2928628(+) A-I      intronic
chr17:2725868(+) A-I      intronic
chr17:2731514(+) A-I      intronic
chr17:2736194(+) A-I      intronic
chr17:2718905(+) A-I      intronic
chr17:2925323(+) A-I      intronic
chr17:2914222(+) A-I      intronic
chr17:2919040(+) A-I      intronic
chr17:2801348(+) A-I      intronic
chr17:2936031(+) A-I      intronic
chr17:2725800(+) A-I      intronic
chr17:2800512(+) A-I      intronic
chr17:2842205(+) A-I      intronic
chr17:2728463(+) A-I      intronic
chr17:2938953(+) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RAP1GAP2
chr17:2878413(+) A-I intron -    22028664
chr17:2878417(+) A-I intron -    22028664
chr17:2878439(+) A-I intron -    22028664
chr17:2878456(+) A-I intron -    22028664
chr17:2878458(+) A-I intron -    22028664
chr17:2891357(+) A-I intron -    21960545
chr17:2891361(+) A-I intron -    21960545

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RAP1GAP2
chr17:2909315-2909316(+) m6A CDS//exon       24284625
chr17:2911310-2911311(+) m6A CDS//exon       24284625
chr17:2911329-2911330(+) m6A CDS//exon       24284625
chr17:2911375-2911376(+) m6A CDS//exon       24284625
chr17:2911392-2911393(+) m6A CDS       24284625
chr17:2921387-2921388(+) m6A CDS//exon       24284625
chr17:2937035-2937036(+) m6A 3'UTR//exon       25456834//24981863
chr17:2937370-2937371(+) m6A 3'UTR//exon       24284625
chr17:2937391-2937392(+) m6A 3'UTR//exon       24284625//24981863
chr17:2937403-2937404(+) m6A 3'UTR//exon       24284625//24981863
chr17:2937593-2937594(+) m6A 3'UTR//exon//intron       24209618
chr17:2937951-2937952(+) m6A 3'UTR//exon//intron       24284625
chr17:2938002-2938003(+) m6A 3'UTR//exon//intron       24284625//25456834
chr17:2938023-2938024(+) m6A 3'UTR//exon//intron       24284625//25456834
chr17:2938243-2938244(+) m6A 3'UTR//exon       24981863
chr17:2940784-2940785(+) m6A 3'UTR//exon       24981863
chr17:2940792-2940793(+) m6A 3'UTR//exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BART19-5p
Exosome B cell line (Raji)     21505438
RAP1GAP2
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART19-5p
Interactor2: RAP1GAP2

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Targetscan
Support Database RepTar//VmiReg

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