Basic Information:

  VIRBase ID:  

VHID00406366

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART19-5p:  MIMAT0004836          ABCA7:  NM_019112     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART19-5p	ABCA7
miRBase Accession/Entrez ID	MIMAT0004836	10347
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ABCA-SSN//ABCX//AD9

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ABCA7	chr19:1061587(+) A-I      intronic chr19:1059692(+) A-I      intronic chr19:1061567(+) A-I      intronic chr19:1061599(+) A-I      intronic chr19:1061542(+) A-I      intronic chr19:1061559(+) A-I      intronic chr19:1060372(+) A-I      intronic chr19:1059516(+) A-I      intronic chr19:1059746(+) A-I      intronic chr19:1059765(+) A-I      intronic chr19:1059768(+) A-I      intronic chr19:1059772(+) A-I      intronic chr19:1060311(+) A-I      intronic chr19:1060328(+) A-I      intronic chr19:1061134(+) A-I      intronic chr19:1061162(+) A-I      intronic chr19:1061170(+) A-I      intronic chr19:1061181(+) A-I      intronic chr19:1061265(+) A-I      intronic chr19:1061467(+) A-I      intronic chr19:1061507(+) A-I      intronic chr19:1061508(+) A-I      intronic chr19:1061518(+) A-I      intronic chr19:1061551(+) A-I      intronic chr19:1061212(+) A-I      intronic chr19:1061610(+) A-I      intronic chr19:1061630(+) A-I      intronic chr19:1059381(+) A-I      intronic chr19:1059393(+) A-I      intronic chr19:1060352(+) A-I      intronic chr19:1059664(+) A-I      intronic chr19:1059728(+) A-I      intronic chr19:1059729(+) A-I      intronic chr19:1059737(+) A-I      intronic chr19:1050381(+) A-I      intronic chr19:1059640(+) A-I      intronic chr19:1061140(+) A-I      intronic chr19:1061647(+) A-I      intronic chr19:1061275(+) A-I      intronic chr19:1061377(+) A-I      intronic chr19:1061454(+) A-I      intronic chr19:1059813(+) A-I      intronic chr19:1059580(+) A-I      intronic chr19:1061186(+) A-I      intronic chr19:1061234(+) A-I      intronic chr19:1060304(+) A-I      intronic chr19:1059680(+) A-I      intronic chr19:1059835(+) A-I      intronic chr19:1059699(+) A-I      intronic chr19:1061321(+) A-I      intronic chr19:1059643(+) A-I      intronic chr19:1061249(+) A-I      intronic chr19:1059471(+) A-I      intronic chr19:1061231(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ABCA7	chr19:1061210(+) A-G intron -    22484847 chr19:1061231(+) A-G intron -    22484847 chr19:1061234(+) A-G intron -    22484847 chr19:1061245(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ABCA7	chr19:1041234-1041235(+) m6A 5'UTR//exon//intron       24284625 chr19:1041419-1041420(+) m6A CDS//exon       24284625 chr19:1043238-1043239(+) m6A CDS       - chr19:1043365-1043366(+) m6A CDS       - chr19:1045110-1045111(+) m6A CDS       - chr19:1045118-1045119(+) m6A CDS       - chr19:1045127-1045128(+) m6A CDS       - chr19:1054795-1054796(+) m6A 3'UTR//CDS       - chr19:1065138-1065139(+) m6A CDS//exon       24284625//22575960 chr19:1065290-1065291(+) m6A CDS//exon       24284625//25456834//22575960 chr19:1065308-1065309(+) m6A CDS//exon       24284625//25456834//22575960//22608085 chr19:1065344-1065345(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chr19:1065412-1065413(+) m6A CDS//exon       24284625//25456834//24981863//22575960//22608085 chr19:1065498-1065499(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BART19-5p	Exosome B cell line (Raji)     21505438
	ABCA7	Chromatin K562 cells     - Cytosol K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Plasma     23663360 Exosome Blood     - Insoluble cytoplasm K562 cells     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART19-5p
Interactor2: ABCA7

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg