Basic Information:

  VIRBase ID:  

VHID00404876

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART18-3p:  MIMAT0004835          GPATCH2:  NM_018040     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART18-3p	GPATCH2
miRBase Accession/Entrez ID	MIMAT0004835	55105
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CT110//GPATC2//Pfa1//PPP1R30

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GPATCH2	chr1:217763536(-) A-I      intronic chr1:217763534(-) A-I      intronic chr1:217763531(-) A-I      intronic chr1:217763530(-) A-I      intronic chr1:217777062(-) A-I      intronic chr1:217772041(-) A-I      intronic chr1:217763527(-) A-I      intronic chr1:217771648(-) A-I      intronic chr1:217687401(-) A-I      intronic chr1:217686586(-) A-I      intronic chr1:217777061(-) A-I      intronic chr1:217777030(-) A-I      intronic chr1:217763580(-) A-I      intronic chr1:217763563(-) A-I      intronic chr1:217777593(-) A-I      intronic chr1:217763545(-) A-I      intronic chr1:217777576(-) A-I      intronic chr1:217777449(-) A-I      intronic chr1:217777221(-) A-I      intronic chr1:217777198(-) A-I      intronic chr1:217777192(-) A-I      intronic chr1:217777140(-) A-I      intronic chr1:217777134(-) A-I      intronic chr1:217777126(-) A-I      intronic chr1:217777133(-) A-I      intronic chr1:217777076(-) A-I      intronic chr1:217763542(-) A-I      intronic chr1:217763541(-) A-I      intronic chr1:217776987(-) A-I      intronic chr1:217741343(-) A-I      intronic chr1:217741347(-) A-I      intronic chr1:217687774(-) A-I      intronic chr1:217706343(-) A-I      intronic chr1:217741412(-) A-I      intronic chr1:217741415(-) A-I      intronic chr1:217797144(-) A-I      intronic chr1:217743565(-) A-I      intronic chr1:217769001(-) A-I      intronic chr1:217777232(-) A-I      intronic chr1:217706497(-) A-I      intronic chr1:217687349(-) A-I      intronic chr1:217743578(-) A-I      intronic chr1:217777513(-) A-I      intronic chr1:217770462(-) A-I      intronic chr1:217758899(-) A-I      intronic chr1:217743656(-) A-I      intronic chr1:217771862(-) A-I      intronic chr1:217628180(-) A-I      intronic chr1:217771910(-) A-I      intronic chr1:217707458(-) A-I      intronic chr1:217627812(-) A-I      intronic chr1:217777067(-) A-I      intronic chr1:217771826(-) A-I      intronic chr1:217777519(-) A-I      intronic chr1:217758783(-) A-I      intronic chr1:217797051(-) A-I      intronic chr1:217707567(-) A-I      intronic chr1:217717492(-) A-I      intronic chr1:217777070(-) A-I      intronic chr1:217706313(-) A-I      intronic chr1:217687266(-) A-I      intronic chr1:217777129(-) A-I      intronic chr1:217777229(-) A-I      intronic chr1:217792303(-) A-I      intronic chr1:217792266(-) A-I      intronic chr1:217777501(-) A-I      intronic chr1:217687666(-) A-I      intronic chr1:217791806(-) A-I      intronic chr1:217770502(-) A-I      intronic chr1:217628169(-) A-I      intronic chr1:217791777(-) A-I      intronic chr1:217684387(-) A-I      intronic chr1:217684357(-) A-I      intronic chr1:217778328(-) A-I      intronic chr1:217770563(-) A-I      intronic chr1:217777141(-) A-I      intronic chr1:217717502(-) A-I      intronic chr1:217771483(-) A-I      intronic chr1:217684356(-) A-I      intronic chr1:217763478(-) A-I      intronic chr1:217777234(-) A-I      intronic chr1:217771581(-) A-I      intronic chr1:217777079(-) A-I      intronic chr1:217717596(-) A-I      intronic chr1:217778322(-) A-I      intronic chr1:217778258(-) A-I      intronic chr1:217717624(-) A-I      intronic chr1:217627819(-) A-I      intronic chr1:217687639(-) A-I      intronic chr1:217627675(-) A-I      intronic chr1:217777488(-) A-I      intronic chr1:217777216(-) A-I      intronic chr1:217777082(-) A-I      intronic chr1:217778156(-) A-I      intronic chr1:217743658(-) A-I      intronic chr1:217743673(-) A-I      intronic chr1:217777086(-) A-I      intronic chr1:217778151(-) A-I      intronic chr1:217777121(-) A-I      intronic chr1:217777260(-) A-I      intronic chr1:217777685(-) A-I      intronic chr1:217772002(-) A-I      intronic chr1:217743674(-) A-I      intronic chr1:217777636(-) A-I      intronic chr1:217743682(-) A-I      intronic chr1:217751353(-) A-I      intronic chr1:217777581(-) A-I      intronic chr1:217751813(-) A-I      intronic chr1:217771692(-) A-I      intronic chr1:217687441(-) A-I      intronic chr1:217627688(-) A-I      intronic chr1:217655019(-) A-I      intronic chr1:217751821(-) A-I      intronic chr1:217628170(-) A-I      intronic chr1:217777159(-) A-I      intronic chr1:217628046(-) A-I      intronic chr1:217777184(-) A-I      intronic chr1:217758806(-) A-I      intronic chr1:217751867(-) A-I      intronic chr1:217628177(-) A-I      intronic chr1:217640310(-) A-I      intronic chr1:217687776(-) A-I      intronic chr1:217688619(-) A-I      intronic chr1:217688717(-) A-I      intronic chr1:217688719(-) A-I      intronic chr1:217706317(-) A-I      intronic chr1:217763491(-) A-I      intronic chr1:217763488(-) A-I      intronic chr1:217706324(-) A-I      intronic chr1:217627742(-) A-I      intronic chr1:217777041(-) A-I      intronic chr1:217770449(-) A-I      intronic chr1:217741310(-) A-I      intronic chr1:217771562(-) A-I      intronic chr1:217780080(-) A-I      intronic chr1:217660906(-) A-I      intronic chr1:217741202(-) A-I      intronic chr1:217751853(-) A-I      intronic chr1:217686484(-) A-I      intronic chr1:217777142(-) A-I      intronic chr1:217768850(-) A-I      intronic chr1:217777442(-) A-I      intronic chr1:217639840(-) A-I      intronic chr1:217777530(-) A-I      intronic chr1:217742951(-) A-I      intronic chr1:217777037(-) A-I      intronic chr1:217771691(-) A-I      intronic chr1:217777606(-) A-I      intronic chr1:217743036(-) A-I      intronic chr1:217688710(-) A-I      intronic chr1:217778380(-) A-I      intronic chr1:217778390(-) A-I      intronic chr1:217707571(-) A-I      intronic chr1:217769098(-) A-I      intronic chr1:217663037(-) A-I      intronic chr1:217758815(-) A-I      intronic chr1:217751757(-) A-I      intronic chr1:217770559(-) A-I      intronic chr1:217768974(-) A-I      intronic chr1:217771933(-) A-I      intronic chr1:217686415(-) A-I      intronic chr1:217771987(-) A-I      intronic chr1:217769081(-) A-I      intronic chr1:217777580(-) A-I      intronic chr1:217777529(-) A-I      intronic chr1:217627996(-) A-I      intronic chr1:217770592(-) A-I      intronic chr1:217742954(-) A-I      intronic chr1:217777240(-) A-I      intronic chr1:217686550(-) A-I      intronic chr1:217769115(-) A-I      intronic chr1:217777237(-) A-I      intronic chr1:217770678(-) A-I      intronic chr1:217688926(-) A-I      intronic chr1:217740526(-) A-I      intronic chr1:217771979(-) A-I      intronic chr1:217687743(-) A-I      intronic chr1:217777436(-) A-I      intronic chr1:217771988(-) A-I      intronic chr1:217792291(-) A-I      intronic chr1:217755130(-) A-I      intronic chr1:217791663(-) A-I      intronic chr1:217791723(-) A-I      intronic chr1:217771985(-) A-I      intronic chr1:217769037(-) A-I      intronic chr1:217777527(-) A-I      intronic chr1:217768934(-) A-I      intronic chr1:217777536(-) A-I      intronic chr1:217768979(-) A-I      intronic chr1:217639862(-) A-I      intronic chr1:217686521(-) A-I      intronic chr1:217739199(-) A-I      intronic chr1:217778267(-) A-I      intronic chr1:217797192(-) A-I      intronic chr1:217757832(-) A-I      intronic chr1:217792193(-) A-I      intronic chr1:217772079(-) A-I      intronic chr1:217772080(-) A-I      intronic chr1:217771721(-) A-I      intronic chr1:217777183(-) A-I      intronic chr1:217771630(-) A-I      intronic chr1:217777463(-) A-I      intronic chr1:217740521(-) A-I      intronic chr1:217792223(-) A-I      intronic chr1:217777571(-) A-I      intronic chr1:217662301(-) A-I      intronic chr1:217769074(-) A-I      intronic chr1:217660864(-) A-I      intronic chr1:217777103(-) A-I      intronic chr1:217777093(-) A-I      intronic chr1:217628139(-) A-I      intronic chr1:217685447(-) A-I      intronic chr1:217769009(-) A-I      intronic chr1:217778157(-) A-I      intronic chr1:217770414(-) A-I      intronic chr1:217688576(-) A-I      intronic chr1:217771986(-) A-I      intronic chr1:217758886(-) A-I      intronic chr1:217777090(-) A-I      intronic chr1:217717474(-) A-I      intronic chr1:217628037(-) A-I      intronic chr1:217751195(-) A-I      intronic chr1:217771906(-) A-I      intronic chr1:217688711(-) A-I      intronic chr1:217777476(-) A-I      intronic chr1:217778285(-) A-I      intronic chr1:217777490(-) A-I      intronic chr1:217751793(-) A-I      intronic chr1:217627697(-) A-I      intronic chr1:217771536(-) A-I      intronic chr1:217777147(-) A-I      intronic chr1:217771506(-) A-I      intronic chr1:217778202(-) A-I      intronic chr1:217777063(-) A-I      intronic chr1:217688928(-) A-I      intronic chr1:217687728(-) A-I      intronic chr1:217792139(-) A-I      intronic chr1:217777434(-) A-I      intronic chr1:217742849(-) A-I      intronic chr1:217763514(-) A-I      intronic chr1:217628130(-) A-I      intronic chr1:217777238(-) A-I      intronic chr1:217662112(-) A-I      intronic chr1:217688950(-) A-I      intronic chr1:217768938(-) A-I      intronic chr1:217778245(-) A-I      intronic chr1:217689042(-) A-I      intronic chr1:217778333(-) A-I      intronic chr1:217778364(-) A-I      intronic chr1:217777545(-) A-I      intronic chr1:217771689(-) A-I      intronic chr1:217777646(-) A-I      intronic chr1:217658662(-) A-I      intronic chr1:217657507(-) A-I      intronic chr1:217771507(-) A-I      intronic chr1:217777143(-) A-I      intronic chr1:217658702(-) A-I      intronic chr1:217667035(-) A-I      intronic chr1:217658669(-) A-I      intronic chr1:217658684(-) A-I      intronic chr1:217777584(-) A-I      intronic chr1:217661263(-) A-I      intronic chr1:217769036(-) A-I      intronic chr1:217776632(-) A-I      intronic chr1:217779582(-) A-I      intronic chr1:217662136(-) A-I      intronic chr1:217772044(-) A-I      intronic chr1:217777057(-) A-I      intronic chr1:217777138(-) A-I      intronic chr1:217628176(-) A-I      intronic chr1:217772036(-) A-I      intronic chr1:217776977(-) A-I      intronic chr1:217771565(-) A-I      intronic chr1:217777102(-) A-I      intronic chr1:217758814(-) A-I      intronic chr1:217777445(-) A-I      intronic chr1:217685476(-) A-I      intronic chr1:217751731(-) A-I      intronic chr1:217771471(-) A-I      intronic chr1:217777211(-) A-I      intronic chr1:217771545(-) A-I      intronic chr1:217741269(-) A-I      intronic chr1:217758955(-) A-I      intronic chr1:217778360(-) A-I      intronic chr1:217778340(-) A-I      intronic chr1:217769012(-) A-I      intronic chr1:217757820(-) A-I      intronic chr1:217771932(-) A-I      intronic chr1:217777611(-) A-I      intronic chr1:217688470(-) A-I      intronic chr1:217740582(-) A-I      intronic chr1:217769073(-) A-I      intronic chr1:217777144(-) A-I      intronic chr1:217771498(-) A-I      intronic chr1:217777053(-) A-I      intronic chr1:217777244(-) A-I      intronic chr1:217662495(-) A-I      intronic chr1:217771523(-) A-I      intronic chr1:217763500(-) A-I      intronic chr1:217661266(-) A-I      intronic chr1:217777448(-) A-I      intronic chr1:217751707(-) A-I      intronic chr1:217771654(-) A-I      intronic chr1:217778255(-) A-I      intronic chr1:217659961(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	GPATCH2	chr1:217667035(-) A-I intron -    19478186 chr1:217639862(-) A-I intron -    21960545 chr1:217657484(-) A-I intron -    21960545 chr1:217657545(-) A-I intron -    21960545 chr1:217658146(-) A-I intron -    21960545 chr1:217658481(-) A-I intron -    21960545 chr1:217658482(-) A-I intron -    21960545 chr1:217658662(-) A-I intron -    21960545 chr1:217658669(-) A-I intron -    21960545 chr1:217658702(-) A-I intron -    21960545 chr1:217658740(-) A-I intron -    21960545 chr1:217662112(-) A-I intron -    21960545 chr1:217662190(-) A-I intron -    21960545 chr1:217662301(-) A-I intron -    21960545 chr1:217663039(-) A-I intron -    21960545 chr1:217770559(-) A-I intron -    21960545 chr1:217771471(-) A-I intron -    21960545 chr1:217657507(-) A-G intron -    22484847 chr1:217658662(-) A-G intron -    22484847 chr1:217658669(-) A-G intron -    22484847 chr1:217658684(-) A-G intron -    22484847 chr1:217658702(-) A-G intron -    22484847 chr1:217762714(-) G-T intron -    22484847 chr1:217627697(-) A-G intron -    22484847 chr1:217628130(-) A-G intron -    22484847 chr1:217628176(-) A-G intron -    22484847 chr1:217639862(-) A-G intron -    22484847 chr1:217661263(-) A-G intron -    22484847 chr1:217687728(-) A-G intron -    22484847 chr1:217687743(-) A-G intron -    22484847 chr1:217689042(-) A-G intron -    22484847 chr1:217707571(-) A-G intron -    22484847 chr1:217741269(-) A-G intron -    22484847 chr1:217742849(-) A-G intron -    22484847 chr1:217742951(-) A-G intron -    22484847 chr1:217742954(-) A-G intron -    22484847 chr1:217751853(-) A-G intron -    22484847 chr1:217758814(-) A-G intron -    22484847 chr1:217758815(-) A-G intron -    22484847 chr1:217758886(-) A-G intron -    22484847 chr1:217769009(-) A-G intron -    22484847 chr1:217769012(-) A-G intron -    22484847 chr1:217770414(-) A-G intron -    22484847 chr1:217770519(-) A-T intron -    22484847 chr1:217770521(-) T-A intron -    22484847 chr1:217770559(-) A-G intron -    22484847 chr1:217771507(-) A-G intron -    22484847 chr1:217771562(-) A-G intron -    22484847 chr1:217771630(-) A-G intron -    22484847 chr1:217771654(-) A-G intron -    22484847 chr1:217771689(-) A-G intron -    22484847 chr1:217771691(-) A-G intron -    22484847 chr1:217771906(-) A-G intron -    22484847 chr1:217771979(-) A-G intron -    22484847 chr1:217771985(-) A-G intron -    22484847 chr1:217771986(-) A-G intron -    22484847 chr1:217771987(-) A-G intron -    22484847 chr1:217771988(-) A-G intron -    22484847 chr1:217772036(-) A-G intron -    22484847 chr1:217772079(-) A-G intron -    22484847 chr1:217772080(-) A-G intron -    22484847 chr1:217777037(-) A-G intron -    22484847 chr1:217777063(-) A-G intron -    22484847 chr1:217777090(-) A-G intron -    22484847 chr1:217777102(-) A-G intron -    22484847 chr1:217777142(-) A-G intron -    22484847 chr1:217777144(-) A-G intron -    22484847 chr1:217777147(-) A-G intron -    22484847 chr1:217777183(-) A-G intron -    22484847 chr1:217777211(-) A-G intron -    22484847 chr1:217777237(-) A-G intron -    22484847 chr1:217777240(-) A-G intron -    22484847 chr1:217777244(-) A-G intron -    22484847 chr1:217777463(-) A-G intron -    22484847 chr1:217777527(-) A-G intron -    22484847 chr1:217777529(-) A-G intron -    22484847 chr1:217777611(-) A-G intron -    22484847 chr1:217777646(-) A-G intron -    22484847 chr1:217778157(-) A-G intron -    22484847 chr1:217778255(-) A-G intron -    22484847 chr1:217792223(-) A-G intron -    22484847 chr1:217797192(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GPATCH2	chr1:217604144-217604145(-) m6A 3'UTR       27773535 chr1:217604292-217604293(-) m6A 3'UTR       27773535 chr1:217604380-217604381(-) m6A 3'UTR       24981863//27773535//22608085 chr1:217604458-217604459(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085 chr1:217604552-217604553(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr1:217604658-217604659(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr1:217622603-217622604(-) m6A CDS       24209618//24981863//27773535 chr1:217622674-217622675(-) m6A CDS       27773535 chr1:217628875-217628876(-) Tm intron       - chr1:217783162-217783163(-) m6A 3'UTR//intron       27773535 chr1:217783268-217783269(-) m6A 3'UTR//intron       24981863 chr1:217783320-217783321(-) m6A 3'UTR//intron       24981863 chr1:217783350-217783351(-) m6A 3'UTR//intron       24981863 chr1:217784254-217784255(-) Y CDS       26075521 chr1:217784402-217784403(-) m6A CDS       27773535//22608085 chr1:217787486-217787487(-) m6A CDS       27773535//22608085 chr1:217793175-217793176(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr1:217793185-217793186(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr1:217793190-217793191(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr1:217793237-217793238(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:217793243-217793244(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:217793277-217793278(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr1:217793316-217793317(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr1:217793322-217793323(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr1:217793359-217793360(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr1:217793376-217793377(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr1:217793428-217793429(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr1:217793445-217793446(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr1:217793477-217793478(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr1:217793505-217793506(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr1:217793592-217793593(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr1:217793603-217793604(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr1:217793647-217793648(-) m6A CDS       24284625//24981863//27773535//22575960//22608085 chr1:217793742-217793743(-) m6A CDS       24284625//27773535 chr1:217793749-217793750(-) m6A CDS       24284625//27773535 chr1:217804398-217804399(-) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GPATCH2	Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID
RNAactDrug	ebv-miR-BART18-3p	Panobinostat       6918837 Topotecan       60700 l-685,458       5479543 Paclitaxel       36314 Sorafenib       216239 Pha-665752       10461815

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART18-3p
Interactor2: GPATCH2

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg