Detail Information

Basic Information:


  VIRBase ID:  

VHID00404573

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART18-3p:           RAD21:      

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Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART18-3p RAD21
miRBase
Accession/Entrez ID		 MIMAT0004835 5885
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - CDLS4//hHR21//HR21//HRAD21//MCD1//MGS//NXP1//SCC1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RAD21
chr8:117881793(-) A-I      intronic
chr8:117881790(-) A-I      intronic
chr8:117880413(-) A-I      intronic
chr8:117880405(-) A-I      intronic
chr8:117865521(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RAD21
chr8:117858650-117858651(-) m6A 3'UTR       24981863
chr8:117858666-117858667(-) m6A 3'UTR       24981863
chr8:117859237-117859238(-) m6A 3'UTR       26404942
chr8:117859789-117859790(-) m6A CDS       27773535
chr8:117859861-117859862(-) m6A CDS       24981863//27773535//27371828
chr8:117859868-117859869(-) m6A CDS       24981863//27773535//27371828
chr8:117859914-117859915(-) m6A CDS       25456834//24981863//28052920//27773535//27371828//27773536//22575960
chr8:117861210-117861211(-) m6A 5'UTR//CDS       25456834//24981863//28052920//27773535//27371828//27773536//22575960
chr8:117861218-117861219(-) m6A 5'UTR//CDS       25456834//24981863//28052920//27773535//27371828//27773536//22575960
chr8:117861242-117861243(-) Am 5'UTR//CDS       -
chr8:117861306-117861307(-) m6A 5'UTR//intron       25456834//24981863//28052920//27773535//27371828//27773536//22575960
chr8:117861644-117861645(-) m6A 5'UTR//intron       24981863
chr8:117861704-117861705(-) m6A 5'UTR//intron       24981863
chr8:117862916-117862917(-) m6A CDS       24981863//28052920
chr8:117862952-117862953(-) m6A CDS       24981863//28052920
chr8:117863090-117863091(-) m6A 5'UTR//intron       24981863
chr8:117864213-117864214(-) m6A 5'UTR//CDS       24981863//27773535
chr8:117864275-117864276(-) m6A 5'UTR//CDS       24981863//27773535
chr8:117864375-117864376(-) m6A 5'UTR//intron       24981863//27773535
chr8:117864822-117864823(-) m6A CDS       27773535
chr8:117869002-117869003(-) m6A CDS       22575960
chr8:117870619-117870620(-) m6A CDS//exon       26404942//22575960
chr8:117875450-117875451(-) Y CDS//exon       25219674
chr8:117886636-117886637(-) m6A 5'UTR//intron       27773536
chr8:117887059-117887060(-) m6A 5'UTR       25456834//24981863
chr8:117887076-117887077(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RAD21
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem ID
RNAactDrug ebv-miR-BART18-3p
Panobinostat       6918837
Topotecan       60700
l-685,458       5479543
Paclitaxel       36314
Sorafenib       216239
Pha-665752       10461815

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART18-3p
Interactor2: RAD21

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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