Basic Information:

  VIRBase ID:  

VHID00404333

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART13-5p:  MIMAT0004818          LEKR1:  NM_001193283     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART13-5p	LEKR1
miRBase Accession/Entrez ID	MIMAT0004818	389170
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LEKR1	chr3:156700728(+) A-I      intronic chr3:156700722(+) A-I      intronic chr3:156700717(+) A-I      intronic chr3:156700727(+) A-I      intronic chr3:156576302(+) A-I      intronic chr3:156700777(+) A-I      intronic chr3:156700763(+) A-I      intronic chr3:156700753(+) A-I      intronic chr3:156627333(+) A-I      intronic chr3:156576384(+) A-I      intronic chr3:156615595(+) A-I      intronic chr3:156576316(+) A-I      intronic chr3:156615643(+) A-I      intronic chr3:156576342(+) A-I      intronic chr3:156622549(+) A-I      intronic chr3:156576307(+) A-I      intronic chr3:156615487(+) A-I      intronic chr3:156615486(+) A-I      intronic chr3:156656346(+) A-I      intronic chr3:156572456(+) A-I      intronic chr3:156650801(+) A-I      intronic chr3:156576383(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	LEKR1	chr3:156627946(+) A-G intron -    22484847 chr3:156628310(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LEKR1	chr3:156544486-156544487(+) m6A 5'UTR//exon//intron       - chr3:156544580-156544581(+) m6A 5'UTR//exon//intron       - chr3:156544721-156544722(+) m6A 5'UTR//intron       - chr3:156544786-156544787(+) m6A 5'UTR//intron       - chr3:156570696-156570697(+) m6A 5'UTR//CDS//exon//intron       - chr3:156570729-156570730(+) m6A 5'UTR//CDS//exon//intron       - chr3:156570735-156570736(+) m6A 5'UTR//CDS//exon//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LEKR1	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART13-5p
Interactor2: LEKR1

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg