Detail Information

Basic Information:


  VIRBase ID:  

VHID00404239

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART13-5p:           ARHGAP27:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART13-5p ARHGAP27
miRBase
Accession/Entrez ID		 MIMAT0004818 201176
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - CAMGAP1//PP905//SH3D20//SH3P20

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ARHGAP27
chr17:43491409(-) A-I      intronic
chr17:43491385(-) A-I      intronic
chr17:43494023(-) A-I      intronic
chr17:43494020(-) A-I      intronic
chr17:43492087(-) A-I      intronic
chr17:43492082(-) A-I      intronic
chr17:43491992(-) A-I      intronic
chr17:43491991(-) A-I      intronic
chr17:43491985(-) A-I      intronic
chr17:43490448(-) A-I      intronic
chr17:43490466(-) A-I      intronic
chr17:43494118(-) A-I      intronic
chr17:43495076(-) A-I      intronic
chr17:43490510(-) A-I      intronic
chr17:43494876(-) A-I      intronic
chr17:43494768(-) A-I      intronic
chr17:43490470(-) A-I      intronic
chr17:43494718(-) A-I      intronic
chr17:43494147(-) A-I      intronic
chr17:43494133(-) A-I      intronic
chr17:43494108(-) A-I      intronic
chr17:43494094(-) A-I      intronic
chr17:43494093(-) A-I      intronic
chr17:43495038(-) A-I      intronic
chr17:43494889(-) A-I      intronic
chr17:43495073(-) A-I      intronic
chr17:43490484(-) A-I      intronic
chr17:43491986(-) A-I      intronic
chr17:43490483(-) A-I      intronic
chr17:43494025(-) A-I      intronic
chr17:43495230(-) A-I      intronic
chr17:43511382(-) A-I      intronic
chr17:43494890(-) A-I      intronic
chr17:43493937(-) A-I      intronic
chr17:43511305(-) A-I      intronic
chr17:43490528(-) A-I      intronic
chr17:43494186(-) A-I      intronic
chr17:43511461(-) A-I      intronic
chr17:43511231(-) A-I      intronic
chr17:43477523(-) A-I      intronic
chr17:43493983(-) A-I      intronic
chr17:43494517(-) A-I      intronic
chr17:43511232(-) A-I      intronic
chr17:43490524(-) A-I      intronic
chr17:43491932(-) A-I      intronic
chr17:43492014(-) A-I      intronic
chr17:43511285(-) A-I      intronic
chr17:43511450(-) A-I      intronic
chr17:43490418(-) A-I      intronic
chr17:43494784(-) A-I      intronic
chr17:43511338(-) A-I      intronic
chr17:43492398(-) A-I      intronic
chr17:43495399(-) A-I      intronic
chr17:43491912(-) A-I      intronic
chr17:43491919(-) A-I      intronic
chr17:43511444(-) A-I      intronic
chr17:43491410(-) A-I      intronic
chr17:43490573(-) A-I      intronic
chr17:43478540(-) A-I      intronic
chr17:43495359(-) A-I      intronic
chr17:43492088(-) A-I      intronic
chr17:43490578(-) A-I      intronic
chr17:43511327(-) A-I      intronic
chr17:43492352(-) A-I      intronic
chr17:43511219(-) A-I      intronic
chr17:43495830(-) A-I      intronic
chr17:43495583(-) A-I      intronic
chr17:43491267(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ARHGAP27
chr17:43471562-43471563(-) m6A 3'UTR//exon       24284625//24981863
chr17:43471586-43471587(-) m6A 3'UTR//exon       24284625//24981863
chr17:43471656-43471657(-) m6A 3'UTR//exon       24284625//24981863
chr17:43471680-43471681(-) m6A 3'UTR//exon       24284625//24981863//27773535//27371828
chr17:43471690-43471691(-) m6A 3'UTR//exon       24284625//24981863//27773535//27371828
chr17:43471716-43471717(-) m6A 3'UTR//exon       24284625//24981863//27773535//27371828
chr17:43471833-43471834(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535//27371828//22608085
chr17:43471866-43471867(-) m6A 3'UTR//exon       24284625//25456834//27773535//27371828//22608085
chr17:43471898-43471899(-) m6A 3'UTR//exon       24284625//25456834//27773535//27371828//22608085
chr17:43471923-43471924(-) m6A 3'UTR//exon       24284625//25456834//27773535//27371828//22608085
chr17:43472092-43472093(-) m6A 3'UTR//exon       27773535
chr17:43472337-43472338(-) m6A 3'UTR//exon       24284625//24981863
chr17:43472342-43472343(-) m6A 3'UTR//exon       24284625//24981863
chr17:43472416-43472417(-) m6A 3'UTR//exon       24284625
chr17:43472731-43472732(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828
chr17:43472840-43472841(-) m6A CDS//exon       25456834//24981863//27371828//27773536
chr17:43472876-43472877(-) m6A CDS//exon       27371828
chr17:43472907-43472908(-) m6A CDS//exon       -
chr17:43473613-43473614(-) m6A CDS//exon       -
chr17:43473643-43473644(-) m6A CDS//exon       -
chr17:43473679-43473680(-) m6A exon//intron       -
chr17:43473710-43473711(-) m6A exon//intron       -
chr17:43474346-43474347(-) m6A CDS//exon       24981863//27371828//27773536
chr17:43481004-43481005(-) m6A 3'UTR//CDS//exon       27371828
chr17:43481012-43481013(-) m6A 3'UTR//CDS//exon       27371828
chr17:43481049-43481050(-) m6A 3'UTR//CDS//exon       27371828
chr17:43481119-43481120(-) m6A exon//intron       27371828
chr17:43481412-43481413(-) m6A 3'UTR//CDS//exon       27371828
chr17:43481448-43481449(-) m6A 3'UTR//CDS//exon       27371828
chr17:43481455-43481456(-) m6A 3'UTR//CDS//exon       27371828
chr17:43481461-43481462(-) m6A 3'UTR//CDS//exon       27371828
chr17:43482104-43482105(-) m6A exon//intron       24284625
chr17:43482329-43482330(-) m6A CDS//exon//intron       27371828
chr17:43482416-43482417(-) m6A CDS//exon       27371828//27773536
chr17:43482452-43482453(-) m6A CDS//exon       27371828//27773536
chr17:43483048-43483049(-) m6A CDS//exon//intron       27371828//27773536
chr17:43483199-43483200(-) m6A 5'UTR//CDS//exon//intron       27371828
chr17:43483219-43483220(-) m6A 5'UTR//CDS//exon       27371828
chr17:43483300-43483301(-) m6A 5'UTR//CDS//exon       24284625//27371828
chr17:43483417-43483418(-) m6A 5'UTR//CDS//exon       24284625//24981863//27371828
chr17:43484907-43484908(-) m6A exon//intron       24284625//24981863//27371828
chr17:43502933-43502934(-) m6A 5'UTR//intron       24981863
chr17:43506721-43506722(-) m6A 3'UTR//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ARHGAP27
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART13-5p
Interactor2: ARHGAP27

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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