Basic Information:

  VIRBase ID:  

VHID00404095

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART13-5p:  MIMAT0004818          UAP1L1:  NM_207309     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART13-5p	UAP1L1
miRBase Accession/Entrez ID	MIMAT0004818	91373
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	UAP1L1	chr9:139972248-139972249(+) m6A CDS       - chr9:139972522-139972523(+) m6A CDS//intron       - chr9:139972620-139972621(+) m6A 5'UTR//CDS//intron       - chr9:139972686-139972687(+) m6A 5'UTR//CDS//intron       - chr9:139972799-139972800(+) m6A 5'UTR//intron       24284625 chr9:139972805-139972806(+) m6A 5'UTR//intron       24284625 chr9:139972817-139972818(+) m6A 5'UTR//intron       - chr9:139972855-139972856(+) m6A CDS//intron       - chr9:139972862-139972863(+) m6A CDS//intron       - chr9:139973108-139973109(+) m6A 3'UTR//CDS//exon       24284625 chr9:139973460-139973461(+) m6A 3'UTR//CDS//exon       24284625 chr9:139973478-139973479(+) m6A 3'UTR//CDS//exon       24284625 chr9:139973523-139973524(+) m6A 3'UTR//CDS//exon       - chr9:139973547-139973548(+) m6A 3'UTR//CDS//exon       24284625 chr9:139973586-139973587(+) m6A 3'UTR//CDS//exon       24284625//25456834 chr9:139973803-139973804(+) m6A CDS//exon       25456834 chr9:139977146-139977147(+) m6A CDS//exon       24284625 chr9:139977190-139977191(+) m6A 3'UTR//exon       24284625 chr9:139977201-139977202(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863 chr9:139977212-139977213(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863 chr9:139977254-139977255(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863 chr9:139977347-139977348(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr9:139977359-139977360(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr9:139977371-139977372(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr9:139977407-139977408(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr9:139977482-139977483(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr9:139977489-139977490(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr9:139977560-139977561(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr9:139977672-139977673(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr9:139977687-139977688(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22608085 chr9:139977733-139977734(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr9:139977848-139977849(+) m6A 3'UTR//exon       24284625//22608085 chr9:139977964-139977965(+) m6A 3'UTR//exon       24284625 chr9:139978147-139978148(+) m6A 3'UTR//exon       24284625 chr9:139978296-139978297(+) m6A 3'UTR//exon       24284625 chr9:139978411-139978412(+) m6A 3'UTR//exon       24284625 chr9:139978436-139978437(+) m6A 3'UTR//exon       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	UAP1L1	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART13-5p
Interactor2: UAP1L1

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg