Detail Information

Basic Information:


  VIRBase ID:  

VHID00404034

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART13-5p:           DTNBP1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART13-5p DTNBP1
miRBase
Accession/Entrez ID		 MIMAT0004818 84062
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - BLOC1S8//DBND//HPS7//My031//SDY

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR DTNBP1
chr6:15564142(-) A-I      intronic
chr6:15656965(-) A-I      intronic
chr6:15660032(-) A-I      intronic
chr6:15660055(-) A-I      intronic
chr6:15564806(-) A-I      intronic
chr6:15564809(-) A-I      intronic
chr6:15613766(-) A-I      intronic
chr6:15613765(-) A-I      intronic
chr6:15576455(-) A-I      intronic
chr6:15576426(-) A-I      intronic
chr6:15576417(-) A-I      intronic
chr6:15576415(-) A-I      intronic
chr6:15576407(-) A-I      intronic
chr6:15564835(-) A-I      intronic
chr6:15567047(-) A-I      intronic
chr6:15573213(-) A-I      intronic
chr6:15567117(-) A-I      intronic
chr6:15567118(-) A-I      intronic
chr6:15573183(-) A-I      intronic
chr6:15573214(-) A-I      intronic
chr6:15574126(-) A-I      intronic
chr6:15574209(-) A-I      intronic
chr6:15656935(-) A-I      intronic
chr6:15567589(-) A-I      intronic
chr6:15541152(-) A-I      intronic
chr6:15531989(-) A-I      intronic
chr6:15531980(-) A-I      intronic
chr6:15531976(-) A-I      intronic
chr6:15531967(-) A-I      intronic
chr6:15583493(-) A-I      intronic
chr6:15574208(-) A-I      intronic
chr6:15583471(-) A-I      intronic
chr6:15656892(-) A-I      intronic
chr6:15564054(-) A-I      intronic
chr6:15564125(-) A-I      intronic
chr6:15564139(-) A-I      intronic
chr6:15583335(-) A-I      intronic
chr6:15581797(-) A-I      intronic
chr6:15576461(-) A-I      intronic
chr6:15579974(-) A-I      intronic
chr6:15577000(-) A-I      intronic
chr6:15567598(-) A-I      intronic
chr6:15655469(-) A-I      intronic
chr6:15655383(-) A-I      intronic
chr6:15613762(-) A-I      intronic
chr6:15591469(-) A-I      intronic
chr6:15613848(-) A-I      intronic
chr6:15613777(-) A-I      intronic
chr6:15579976(-) A-I      intronic
chr6:15613847(-) A-I      intronic
chr6:15613869(-) A-I      intronic
chr6:15576471(-) A-I      intronic
chr6:15653003(-) A-I      intronic
chr6:15591457(-) A-I      intronic
chr6:15567562(-) A-I      intronic
chr6:15567193(-) A-I      intronic
chr6:15594596(-) A-I      intronic
chr6:15567637(-) A-I      intronic
chr6:15591413(-) A-I      intronic
chr6:15541048(-) A-I      intronic
chr6:15537462(-) A-I      intronic
chr6:15567608(-) A-I      intronic
chr6:15573811(-) A-I      intronic
chr6:15535644(-) A-I      intronic
chr6:15566999(-) A-I      intronic
chr6:15659922(-) A-I      intronic
chr6:15594572(-) A-I      intronic
chr6:15573968(-) A-I      intronic
chr6:15567195(-) A-I      intronic
chr6:15576884(-) A-I      intronic
chr6:15567072(-) A-I      intronic
chr6:15656896(-) A-I      intronic
chr6:15659921(-) A-I      intronic
chr6:15576789(-) A-I      intronic
chr6:15529513(-) A-I      intronic
chr6:15613823(-) A-I      intronic
chr6:15564803(-) A-I      intronic
chr6:15576878(-) A-I      intronic
chr6:15567506(-) A-I      intronic
chr6:15613870(-) A-I      intronic
chr6:15535725(-) A-I      intronic
chr6:15564931(-) A-I      intronic
chr6:15567194(-) A-I      intronic
chr6:15567070(-) A-I      intronic
chr6:15567210(-) A-I      intronic
chr6:15576918(-) A-I      intronic
chr6:15564776(-) A-I      intronic
chr6:15541037(-) A-I      intronic
chr6:15567652(-) A-I      intronic
chr6:15567632(-) A-I      intronic
chr6:15535572(-) A-I      intronic
chr6:15565268(-) A-I      intronic
chr6:15567514(-) A-I      intronic
chr6:15567043(-) A-I      intronic
chr6:15576888(-) A-I      intronic
chr6:15590227(-) A-I      intronic
chr6:15613886(-) A-I      intronic
chr6:15576478(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED DTNBP1
chr6:15535725(-) A-G intron -    22484847
chr6:15564931(-) A-G intron -    22484847
chr6:15567159(-) A-G intron -    22484847
chr6:15567194(-) A-G intron -    22484847
chr6:15567506(-) A-G intron -    22484847
chr6:15567514(-) A-G intron -    22484847
chr6:15567560(-) A-G intron -    22484847
chr6:15567562(-) A-G intron -    22484847
chr6:15567608(-) A-G intron -    22484847
chr6:15567632(-) A-G intron -    22484847
chr6:15567637(-) A-G intron -    22484847
chr6:15576789(-) A-G intron -    22484847
chr6:15576918(-) A-G intron -    22484847
chr6:15579976(-) A-G intron -    22484847
chr6:15591457(-) A-G intron -    22484847
chr6:15602095(-) C-T intron -    22484847
chr6:15613376(-) A-G intron -    22484847
chr6:15656867(-) A-G intron -    22484847
chr6:15656896(-) A-G intron -    22484847
chr6:15656897(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase DTNBP1
chr6:15523037-15523038(-) m6A 3'UTR       27773535//22608085
chr6:15523067-15523068(-) m6A 3'UTR       24981863//27773535//22608085
chr6:15523076-15523077(-) m6A 3'UTR       24981863//27773535//22608085
chr6:15523198-15523199(-) m6A 3'UTR       25456834//24981863//27773535//27371828//22608085
chr6:15523218-15523219(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr6:15523275-15523276(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr6:15523335-15523336(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr6:15533621-15533622(-) m6A 3'UTR//5'UTR//CDS//exon       27773535
chr6:15533655-15533656(-) m6A exon//intron       27773535
chr6:15593298-15593299(-) m6A 3'UTR//CDS       27773535
chr6:15593305-15593306(-) m6A 3'UTR//CDS       27773535
chr6:15615541-15615542(-) m6A 3'UTR//CDS       27773535
chr6:15615575-15615576(-) m6A 3'UTR//CDS       24981863//27773535
chr6:15615596-15615597(-) m6A 3'UTR//CDS       24981863//27773535
chr6:15627599-15627600(-) m6A 3'UTR//CDS       24981863//27773535
chr6:15627654-15627655(-) m6A 3'UTR//CDS       27773535
chr6:15651592-15651593(-) m6A 3'UTR//CDS//intron       27371828
chr6:15651623-15651624(-) m6A CDS//intron       27371828//27773536
chr6:15652322-15652323(-) m6A 3'UTR//CDS//intron       27371828//27773536
chr6:15652363-15652364(-) m6A 3'UTR//CDS//intron       24209618//27371828//27773536
chr6:15660643-15660644(-) m6A 3'UTR//intron       24209618//27371828//27773536
chr6:15660649-15660650(-) m6A 3'UTR//intron       24209618//27371828//27773536
chr6:15660685-15660686(-) m6A CDS//intron       24209618//27371828//27773536
chr6:15660725-15660726(-) m6A CDS//intron       24209618//27371828//27773536
chr6:15660733-15660734(-) m6A CDS//intron       24209618//27371828
chr6:15663090-15663091(-) m6A CDS       24209618//25456834//24981863//27371828
chr6:15663115-15663116(-) m6A 5'UTR       25456834//24981863//27371828//27773536
chr6:15663164-15663165(-) m6A 5'UTR       25456834//24981863//27371828//27773536
chr6:15663230-15663231(-) m6A 5'UTR       25456834//24981863
chr6:15663235-15663236(-) m6A 5'UTR       25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate DTNBP1
Chromatin K562 cells     -
Cytosol K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART13-5p
Interactor2: DTNBP1

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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