Detail Information

Basic Information:


  VIRBase ID:  

VHID00403859

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART13-5p:           REXO4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART13-5p REXO4
miRBase
Accession/Entrez ID		 MIMAT0004818 57109
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - REX4//XPMC2//XPMC2H

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR REXO4
chr9:136281067(-) A-I      intronic
chr9:136281050(-) A-I      intronic
chr9:136278329(-) A-I      intronic
chr9:136278321(-) A-I      intronic
chr9:136277160(-) A-I      intronic
chr9:136273471(-) A-I      intronic
chr9:136273448(-) A-I      intronic
chr9:136274305(-) A-I      intronic
chr9:136281583(-) A-I      intronic
chr9:136277146(-) A-I      intronic
chr9:136277045(-) A-I      intronic
chr9:136273375(-) A-I      intronic
chr9:136278224(-) A-I      intronic
chr9:136281093(-) A-I      intronic
chr9:136273360(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED REXO4
chr9:136271309(-) A-C exon 3'UTR    21725310

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase REXO4
chr9:136271231-136271232(-) m6A 3'UTR       24284625//24981863//27773535
chr9:136271246-136271247(-) m6A 3'UTR       24284625//24981863//27773535
chr9:136271308-136271309(-) m6A 3'UTR       24284625//24981863//27773535
chr9:136271321-136271322(-) m6A 3'UTR       24284625//24981863//27773535
chr9:136271414-136271415(-) m6A 3'UTR       24284625//27773535
chr9:136271544-136271545(-) m6A 3'UTR       24284625//24981863
chr9:136271599-136271600(-) m6A 3'UTR       24284625//24981863//27773535
chr9:136271626-136271627(-) m6A 3'UTR       24284625
chr9:136271632-136271633(-) m6A 3'UTR       24284625
chr9:136271660-136271661(-) m6A 3'UTR       24284625
chr9:136271899-136271900(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr9:136271979-136271980(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr9:136272016-136272017(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22608085
chr9:136272098-136272099(-) m6A CDS       24284625//24981863//27371828//27773536
chr9:136272125-136272126(-) m6A CDS       24284625//27371828//27773536
chr9:136272984-136272985(-) m6A CDS       24284625//24981863
chr9:136273912-136273913(-) m6A CDS       24981863//27773535
chr9:136273928-136273929(-) m6A CDS       24981863//27773535
chr9:136277429-136277430(-) m6A CDS//exon//intron       24209618//24981863//27773535
chr9:136277457-136277458(-) m6A CDS//exon//intron       24209618//24981863//27773535
chr9:136277465-136277466(-) m6A CDS//exon//intron       24209618//24981863//27773535
chr9:136277485-136277486(-) m6A CDS//exon//intron       24209618//27773535
chr9:136277522-136277523(-) m6A CDS//exon//intron       24284625//24209618//27773535//27371828
chr9:136277588-136277589(-) m6A CDS//exon//intron       24284625//24209618//27773535//27371828
chr9:136277959-136277960(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//27371828
chr9:136278014-136278015(-) m6A CDS//exon//intron       24284625//24209618//24981863//28052920//27773535//27371828
chr9:136278035-136278036(-) m6A CDS//exon//intron       24284625//24209618//24981863//28052920//27773535//27371828
chr9:136279838-136279839(-) m6A CDS//exon//intron       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr9:136279869-136279870(-) m6A CDS//exon//intron       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr9:136279881-136279882(-) m6A CDS//exon//intron       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr9:136279902-136279903(-) m6A CDS//exon//intron       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr9:136279940-136279941(-) m6A CDS//exon//intron       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr9:136279985-136279986(-) m6A CDS//intron       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr9:136280028-136280029(-) m6A CDS//intron       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr9:136280039-136280040(-) m6A CDS//intron       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr9:136280119-136280120(-) m6A 5'UTR//CDS//intron       24284625//24981863//27773535//27371828//27773536
chr9:136280784-136280785(-) m6A 5'UTR//intron       24284625//24981863//27773535//27371828//27773536
chr9:136280847-136280848(-) m6A 5'UTR//intron       24284625//27773536
chr9:136282758-136282759(-) m6A CDS//exon       25456834//27773536
chr9:136282770-136282771(-) m6A CDS//exon       25456834//27773536
chr9:136282872-136282873(-) m6A CDS//exon       24284625//24209618//27773536
chr9:136283151-136283152(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate REXO4
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART13-5p
Interactor2: REXO4

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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