Basic Information:

  VIRBase ID:  

VHID00403516

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART13-5p:  MIMAT0004818          DNAJB6:  NM_001363676     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART13-5p	DNAJB6
miRBase Accession/Entrez ID	MIMAT0004818	10049
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DJ4//DnaJ//HHDJ1//HSJ-2//HSJ2//LGMD1D//LGMD1E//LGMDD1//MRJ//MSJ-1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	DNAJB6	chr7:157135760(+) A-I      intronic chr7:157188823(+) A-I      intronic chr7:157154602(+) A-I      intronic chr7:157154604(+) A-I      intronic chr7:157135360(+) A-I      intronic chr7:157169471(+) A-I      intronic chr7:157169464(+) A-I      intronic chr7:157169420(+) A-I      intronic chr7:157167083(+) A-I      intronic chr7:157166621(+) A-I      intronic chr7:157165654(+) A-I      intronic chr7:157166068(+) A-I      intronic chr7:157135421(+) A-I      intronic chr7:157144947(+) A-I      intronic chr7:157166106(+) A-I      intronic chr7:157143817(+) A-I      intronic chr7:157143733(+) A-I      intronic chr7:157143647(+) A-I      intronic chr7:157142382(+) A-I      intronic chr7:157154580(+) A-I      intronic chr7:157137712(+) A-I      intronic chr7:157137711(+) A-I      intronic chr7:157166108(+) A-I      intronic chr7:157166114(+) A-I      intronic chr7:157166149(+) A-I      intronic chr7:157166242(+) A-I      intronic chr7:157166245(+) A-I      intronic chr7:157166598(+) A-I      intronic chr7:157166602(+) A-I      intronic chr7:157169562(+) A-I      intronic chr7:157169495(+) A-I      intronic chr7:157136914(+) A-I      intronic chr7:157136920(+) A-I      intronic chr7:157169374(+) A-I      intronic chr7:157169388(+) A-I      intronic chr7:157144814(+) A-I      intronic chr7:157169417(+) A-I      intronic chr7:157169481(+) A-I      intronic chr7:157169523(+) A-I      intronic chr7:157169423(+) A-I      intronic chr7:157169424(+) A-I      intronic chr7:157137437(+) A-I      intronic chr7:157136941(+) A-I      intronic chr7:157136902(+) A-I      intronic chr7:157136862(+) A-I      intronic chr7:157169428(+) A-I      intronic chr7:157169448(+) A-I      intronic chr7:157188673(+) A-I      intronic chr7:157136785(+) A-I      intronic chr7:157169397(+) A-I      intronic chr7:157136780(+) A-I      intronic chr7:157169365(+) A-I      intronic chr7:157183583(+) A-I      intronic chr7:157152298(+) A-I      intronic chr7:157188722(+) A-I      intronic chr7:157136924(+) A-I      intronic chr7:157136323(+) A-I      intronic chr7:157134744(+) A-I      intronic chr7:157144944(+) A-I      intronic chr7:157166190(+) A-I      intronic chr7:157166647(+) A-I      intronic chr7:157143811(+) A-I      intronic chr7:157169524(+) A-I      intronic chr7:157144144(+) A-I      intronic chr7:157169379(+) A-I      intronic chr7:157187735(+) A-I      intronic chr7:157143790(+) A-I      intronic chr7:157166228(+) A-I      intronic chr7:157169319(+) A-I      intronic chr7:157143693(+) A-I      intronic chr7:157169404(+) A-I      intronic chr7:157169376(+) A-I      intronic chr7:157166259(+) A-I      intronic chr7:157144837(+) A-I      intronic chr7:157166124(+) A-I      intronic chr7:157136881(+) A-I      intronic chr7:157166620(+) A-I      intronic chr7:157169416(+) A-I      intronic chr7:157169399(+) A-I      intronic chr7:157144770(+) A-I      intronic chr7:157136947(+) A-I      intronic chr7:157144784(+) A-I      intronic chr7:157150185(+) A-I      intronic chr7:157135779(+) A-I      intronic chr7:157166630(+) A-I      intronic chr7:157179413(+) A-I      intronic chr7:157150267(+) A-I      intronic chr7:157167175(+) A-I      intronic chr7:157166225(+) A-I      intronic chr7:157172281(+) A-I      intronic chr7:157144145(+) A-I      intronic chr7:157165699(+) A-I      intronic chr7:157169444(+) A-I      intronic chr7:157166986(+) A-I      intronic chr7:157144943(+) A-I      intronic chr7:157166174(+) A-I      intronic chr7:157134955(+) A-I      intronic chr7:157143722(+) A-I      intronic chr7:157169389(+) A-I      intronic chr7:157169537(+) A-I      intronic chr7:157166319(+) A-I      intronic chr7:157136773(+) A-I      intronic chr7:157142558(+) A-I      intronic chr7:157169454(+) A-I      intronic chr7:157188775(+) A-I      intronic chr7:157152285(+) A-I      intronic chr7:157172250(+) A-I      intronic chr7:157144880(+) A-I      intronic chr7:157152142(+) A-I      intronic chr7:157152167(+) A-I      intronic chr7:157172321(+) A-I      intronic chr7:157136882(+) A-I      intronic chr7:157183654(+) A-I      intronic chr7:157183599(+) A-I      intronic chr7:157135340(+) A-I      intronic chr7:157184540(+) A-I      intronic chr7:157167093(+) A-I      intronic chr7:157155660(+) A-I      intronic chr7:157169413(+) A-I      intronic chr7:157137877(+) A-I      intronic chr7:157184650(+) A-I      intronic chr7:157133502(+) A-I      intronic chr7:157135125(+) A-I      intronic chr7:157169414(+) A-I      intronic chr7:157180814(+) A-I      intronic chr7:157169320(+) A-I      intronic chr7:157136956(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	DNAJB6	chr7:157166647(+) A-I intron -    21960545   //22327324 chr7:157152107(+) A-I intron -    21960545 chr7:157152167(+) A-I intron -    21960545 chr7:157165692(+) A-I intron -    21960545 chr7:157176852(+) A-I intron -    21960545 chr7:157135125(+) A-G intron -    22484847 chr7:157135872(+) T-A intron -    22484847 chr7:157136773(+) A-G intron -    22484847 chr7:157143722(+) A-G intron -    22484847 chr7:157144144(+) A-G intron -    22484847 chr7:157165692(+) A-G intron -    22484847 chr7:157166259(+) A-G intron -    22484847 chr7:157166319(+) A-G intron -    22484847 chr7:157166620(+) A-G intron -    22484847 chr7:157166647(+) A-G intron -    22484847 chr7:157167054(+) A-G intron -    22484847 chr7:157169365(+) A-G intron -    22484847 chr7:157169454(+) A-G intron -    22484847 chr7:157169506(+) A-G intron -    22484847 chr7:157172691(+) A-G intron -    22484847 chr7:157172728(+) A-G intron -    22484847 chr7:157172743(+) A-G intron -    22484847 chr7:157173716(+) A-G intron -    22484847 chr7:157188775(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	DNAJB6	chr7:157129221-157129222(+) m6A 5'UTR       27773536 chr7:157130249-157130250(+) m6A 5'UTR//intron       25456834//24981863 chr7:157151264-157151265(+) m6A 5'UTR//exon       24981863 chr7:157151301-157151302(+) m6A CDS//exon       24981863//27773535 chr7:157155863-157155864(+) m6A CDS//exon       24981863//27773535 chr7:157159207-157159208(+) m6A CDS//exon       24981863 chr7:157178370-157178371(+) m6A 3'UTR//exon//intron       24981863//22608085 chr7:157178403-157178404(+) m6A 3'UTR//exon//intron       24981863//22608085 chr7:157178428-157178429(+) m6A 3'UTR//exon//intron       24981863//22608085 chr7:157178467-157178468(+) m6A 3'UTR//exon//intron       24981863 chr7:157178497-157178498(+) m6A 3'UTR//exon//intron       24981863 chr7:157202606-157202607(+) m6A CDS//exon       24284625//24209618//25456834 chr7:157202647-157202648(+) m6A CDS//exon       24284625//24209618//25456834//27773535//22575960//22608085 chr7:157202674-157202675(+) m6A CDS//exon       24284625//24209618//25456834//27773535//22575960//22608085 chr7:157202736-157202737(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr7:157202756-157202757(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr7:157202765-157202766(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr7:157202771-157202772(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22608085 chr7:157203475-157203476(+) m6A 3'UTR//intron       25456834//24981863 chr7:157203508-157203509(+) m6A 3'UTR//intron       24981863 chr7:157203519-157203520(+) m6A 3'UTR//intron       24981863 chr7:157203538-157203539(+) m6A 3'UTR//intron       24981863 chr7:157203582-157203583(+) m6A 3'UTR//intron       24981863 chr7:157208070-157208071(+) m6A 3'UTR//intron       25456834 chr7:157208092-157208093(+) m6A 3'UTR//intron       25456834 chr7:157208125-157208126(+) m6A 3'UTR//intron       25456834//24981863 chr7:157208198-157208199(+) m6A 3'UTR//intron       24209618//25456834//24981863//22608085 chr7:157208208-157208209(+) m6A 3'UTR//intron       24209618//25456834//24981863//22608085 chr7:157208735-157208736(+) m1A 3'UTR//CDS       26863196 chr7:157208762-157208763(+) m1A 3'UTR//CDS       26863196 chr7:157208792-157208793(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr7:157208797-157208798(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr7:157208889-157208890(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr7:157208984-157208985(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr7:157208997-157208998(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr7:157209956-157209957(+) m6A 3'UTR       27773535 chr7:157210060-157210061(+) m6A 3'UTR       27773535 chr7:157210075-157210076(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	DNAJB6	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART13-5p
Interactor2: DNAJB6

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg