Basic Information:

  VIRBase ID:  

VHID00403513

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART13-5p:  MIMAT0004818          WDR1:  NM_005112     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART13-5p	WDR1
miRBase Accession/Entrez ID	MIMAT0004818	9948
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	AIP1//HEL-S-52//NORI-1//PFITS

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	WDR1	chr4:10114850(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	WDR1	chr4:10087572(-) A-I intron -    21960545 chr4:10089146(-) A-I intron -    21960545 chr4:10075985(-) T-A exon 3'UTR    21725310

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	WDR1	chr4:10076719-10076720(-) m6A 3'UTR       24981863//27773535 chr4:10076735-10076736(-) m6A 3'UTR       24981863//27773535 chr4:10076752-10076753(-) m6A 3'UTR       27773535 chr4:10076775-10076776(-) m6A 3'UTR//exon       27773535 chr4:10076816-10076817(-) m6A 3'UTR//exon       27773535 chr4:10076940-10076941(-) m6A 3'UTR//exon       24284625//24981863//28052920//26404942//27773535//27371828//22575960 chr4:10076962-10076963(-) m6A 3'UTR//exon       24284625//24981863//28052920//26404942//27773535//27371828//27773536//22575960 chr4:10076974-10076975(-) m6A 3'UTR//exon       24284625//24981863//28052920//26404942//27773535//27371828//27773536//22575960 chr4:10077015-10077016(-) m6A CDS//exon       24284625//24981863//28052920//26404942//27773535//27371828//27773536//22575960 chr4:10077390-10077391(-) m6A exon//intron       24284625//27371828//27773536//22575960 chr4:10077404-10077405(-) m6A exon//intron       24284625 chr4:10077730-10077731(-) m6A exon//intron       27371828 chr4:10077756-10077757(-) m6A exon//intron       27371828 chr4:10078766-10078767(-) m6A exon//intron       22575960 chr4:10078936-10078937(-) Am CDS//exon       - chr4:10078945-10078946(-) m6A CDS//exon       22575960 chr4:10078963-10078964(-) m6A CDS//exon       22575960 chr4:10078983-10078984(-) m6A CDS//exon       22575960 chr4:10079006-10079007(-) m6A CDS//exon       22575960 chr4:10079013-10079014(-) m6A CDS//exon       22575960 chr4:10079051-10079052(-) m6A CDS//exon       22575960 chr4:10079067-10079068(-) m6A CDS//exon       22575960 chr4:10080536-10080537(-) m6A CDS//exon       24284625//27773536//22575960 chr4:10082983-10082984(-) m6A CDS//exon       24284625//22575960 chr4:10083049-10083050(-) m6A CDS//exon       24284625//27773535//22575960 chr4:10083064-10083065(-) m6A CDS//exon       24284625//27773535//22575960 chr4:10084651-10084652(-) m6A CDS//exon       24284625//27773535//22575960 chr4:10084744-10084745(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22575960 chr4:10086073-10086074(-) m6A CDS//exon       24981863//26404942//27773535//22575960 chr4:10089361-10089362(-) m6A CDS//exon       27773535//22575960 chr4:10089367-10089368(-) m6A CDS//exon       27773535//22575960 chr4:10089412-10089413(-) m6A CDS//exon       - chr4:10089442-10089443(-) m6A CDS//exon       - chr4:10089975-10089976(-) m6A CDS//exon       27773535//22575960 chr4:10090318-10090319(-) m6A CDS//exon       27773535//22575960 chr4:10093160-10093161(-) m6A exon//intron       27773535 chr4:10093167-10093168(-) m6A exon//intron       27773535 chr4:10093174-10093175(-) m6A exon//intron       27773535 chr4:10093352-10093353(-) m6A exon//intron       25456834//27371828 chr4:10093377-10093378(-) m6A exon//intron       25456834//27371828 chr4:10093410-10093411(-) m6A exon//intron       25456834//27371828 chr4:10093417-10093418(-) m6A exon//intron       25456834//27371828 chr4:10093427-10093428(-) m6A exon//intron       25456834 chr4:10093436-10093437(-) m6A exon//intron       25456834 chr4:10098237-10098238(-) m6A exon//intron       24981863//27773535//27371828 chr4:10099364-10099365(-) m6A CDS//exon//intron       24981863//27773535//27371828 chr4:10099434-10099435(-) m6A CDS//exon//intron       24981863//26404942//27773535//27371828//22575960 chr4:10099460-10099461(-) m6A CDS//exon//intron       24981863//26404942//27773535//27371828//22575960 chr4:10100654-10100655(-) m6A CDS//exon//intron       26404942//27773535//22575960 chr4:10100661-10100662(-) m6A CDS//exon//intron       26404942//27773535//22575960 chr4:10100672-10100673(-) m6A CDS//exon//intron       26404942//27773535//22575960 chr4:10108074-10108075(-) m6A exon//intron       27773535//22575960 chr4:10117743-10117744(-) m6A CDS//exon       27371828//27773536//22575960 chr4:10117940-10117941(-) m6A 5'UTR//intron       24981863//27371828//27773536 chr4:10118109-10118110(-) m6A exon//intron       24981863 chr4:10118429-10118430(-) m6A 5'UTR//exon       24981863//27371828//27773536 chr4:10118508-10118509(-) m6A 5'UTR       24981863//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	WDR1	Chromatin K562 cells     - Cytosol HeLa-S3 cells|K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART13-5p
Interactor2: WDR1

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg