Basic Information:

  VIRBase ID:  

VHID00403312

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART13-5p:  MIMAT0004818          PWP2:  NM_005049     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART13-5p	PWP2
miRBase Accession/Entrez ID	MIMAT0004818	5822
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	EHOC-17//PWP2H//UTP1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PWP2	chr21:45531775(+) A-I      intronic chr21:45531761(+) A-I      intronic chr21:45531780(+) A-I      intronic chr21:45542724(+) A-I      intronic chr21:45542743(+) A-I      intronic chr21:45544189(+) A-I      intronic chr21:45532874(+) A-I      intronic chr21:45542663(+) A-I      intronic chr21:45542675(+) A-I      intronic chr21:45542711(+) A-I      intronic chr21:45531858(+) A-I      intronic chr21:45542719(+) A-I      intronic chr21:45531783(+) A-I      intronic chr21:45531778(+) A-I      intronic chr21:45542742(+) A-I      intronic chr21:45544188(+) A-I      intronic chr21:45544321(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PWP2	chr21:45534588-45534589(+) m6A CDS//exon       22575960 chr21:45534593-45534594(+) m6A CDS//exon       22575960 chr21:45534617-45534618(+) m6A CDS//exon       22575960 chr21:45535167-45535168(+) m6A CDS//exon       22575960 chr21:45535668-45535669(+) m6A CDS//exon       24284625//25456834//24981863//27773536 chr21:45535707-45535708(+) m6A CDS//exon       24284625//25456834//24981863//27773536 chr21:45535727-45535728(+) m6A CDS//exon       24284625//25456834//24981863//27773536 chr21:45535769-45535770(+) m6A CDS//exon       24284625//25456834//24981863//27773536 chr21:45542111-45542112(+) m6A CDS//exon       24284625 chr21:45542132-45542133(+) m6A CDS//exon       24284625 chr21:45542185-45542186(+) m6A CDS//exon       24284625//22575960 chr21:45542204-45542205(+) m6A CDS//exon       24284625//22575960 chr21:45546805-45546806(+) m6A CDS//exon       24284625 chr21:45547944-45547945(+) m6A CDS//exon       - chr21:45547990-45547991(+) m6A CDS//exon       24284625 chr21:45548155-45548156(+) m6A CDS//exon       24284625 chr21:45548234-45548235(+) m6A CDS//exon       24284625 chr21:45548242-45548243(+) m6A CDS//exon       24284625 chr21:45548260-45548261(+) m6A CDS//exon       24284625 chr21:45548504-45548505(+) m6A CDS//exon       24284625//22575960 chr21:45550489-45550490(+) m6A CDS       24284625//22575960 chr21:45550552-45550553(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr21:45550627-45550628(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr21:45550636-45550637(+) m1A CDS       26863196 chr21:45550690-45550691(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr21:45550708-45550709(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr21:45550751-45550752(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr21:45550817-45550818(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr21:45550934-45550935(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr21:45550946-45550947(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr21:45550983-45550984(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PWP2	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART13-5p
Interactor2: PWP2

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg