Detail Information

Basic Information:


  VIRBase ID:  

VHID00403197

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART13-5p:           IRS1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART13-5p IRS1
miRBase
Accession/Entrez ID		 MIMAT0004818 3667
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - HIRS-1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR IRS1
chr2:227630995(-) A-I      intronic
chr2:227650802(-) A-I      intronic
chr2:227631004(-) A-I      intronic
chr2:227630996(-) A-I      intronic
chr2:227631047(-) A-I      intronic
chr2:227650207(-) A-I      intronic
chr2:227631018(-) A-I      intronic
chr2:227630977(-) A-I      intronic
chr2:227631039(-) A-I      intronic
chr2:227649430(-) A-I      intronic
chr2:227649318(-) A-I      intronic
chr2:227649287(-) A-I      intronic
chr2:227631160(-) A-I      intronic
chr2:227631126(-) A-I      intronic
chr2:227631125(-) A-I      intronic
chr2:227631112(-) A-I      intronic
chr2:227631017(-) A-I      intronic
chr2:227630976(-) A-I      intronic
chr2:227630947(-) A-I      intronic
chr2:227629901(-) A-I      intronic
chr2:227649271(-) A-I      intronic
chr2:227650317(-) A-I      intronic
chr2:227650139(-) A-I      intronic
chr2:227650084(-) A-I      intronic
chr2:227650062(-) A-I      intronic
chr2:227650053(-) A-I      intronic
chr2:227649333(-) A-I      intronic
chr2:227650225(-) A-I      intronic
chr2:227650197(-) A-I      intronic
chr2:227649166(-) A-I      intronic
chr2:227649411(-) A-I      intronic
chr2:227649412(-) A-I      intronic
chr2:227649321(-) A-I      intronic
chr2:227649332(-) A-I      intronic
chr2:227649235(-) A-I      intronic
chr2:227631058(-) A-I      intronic
chr2:227630988(-) A-I      intronic
chr2:227611634(-) A-I      intronic
chr2:227649224(-) A-I      intronic
chr2:227650315(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase IRS1
chr2:227600394-227600395(-) m6A 3'UTR       27773535
chr2:227600560-227600561(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535
chr2:227600602-227600603(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr2:227600702-227600703(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr2:227600723-227600724(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr2:227600795-227600796(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr2:227600882-227600883(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr2:227600912-227600913(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085
chr2:227600958-227600959(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535
chr2:227656939-227656940(-) m6A exon//intron       24284625//24981863//27773535
chr2:227656945-227656946(-) m6A exon//intron       24284625//24981863//27773535
chr2:227656961-227656962(-) m6A exon//intron       27773535
chr2:227657021-227657022(-) m6A exon//intron       24284625//24981863
chr2:227659715-227659716(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535
chr2:227659735-227659736(-) m6A CDS//exon       24284625//24209618//24981863//27773535
chr2:227659860-227659861(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:227659887-227659888(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:227659894-227659895(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:227659912-227659913(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:227659959-227659960(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:227660147-227660148(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:227660182-227660183(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:227660227-227660228(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr2:227660259-227660260(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr2:227660405-227660406(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27371828//22575960//22608085
chr2:227660446-227660447(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:227660562-227660563(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr2:227660620-227660621(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr2:227660648-227660649(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:227660903-227660904(-) m6A CDS       24284625//24209618//24981863//26404942//22575960
chr2:227660917-227660918(-) m6A CDS       24284625//24209618//24981863//26404942//22575960
chr2:227661190-227661191(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535
chr2:227661235-227661236(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr2:227661253-227661254(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr2:227661309-227661310(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:227661356-227661357(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:227661377-227661378(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:227661481-227661482(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:227661562-227661563(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:227661649-227661650(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:227661744-227661745(-) m6A CDS       24284625//25456834//24981863//26404942//27773535//22575960//22608085
chr2:227661839-227661840(-) m6A CDS       24284625//24981863//26404942//27773535//22575960//22608085
chr2:227661881-227661882(-) m6A CDS       24284625//24981863//26404942//27773535//22575960//22608085
chr2:227661962-227661963(-) m6A CDS       24284625//24981863//27773535//22575960
chr2:227662394-227662395(-) m6A CDS       24284625
chr2:227662700-227662701(-) m6A CDS       24284625//24209618//25456834//27773535//22575960
chr2:227662711-227662712(-) m6A CDS       24284625//24209618//25456834//27773535//22575960
chr2:227662798-227662799(-) m6A CDS       24284625//24209618//25456834//24981863
chr2:227662825-227662826(-) m6A CDS       24284625//24209618//25456834//24981863
chr2:227662861-227662862(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr2:227662883-227662884(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr2:227662921-227662922(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27371828//22575960//22608085
chr2:227662928-227662929(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27371828//22575960//22608085
chr2:227662983-227662984(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27371828//22575960//22608085
chr2:227663011-227663012(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//22575960//22608085
chr2:227663143-227663144(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:227663161-227663162(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:227663215-227663216(-) m6A CDS       24284625//24209618//24981863//27773535//27371828
chr2:227663391-227663392(-) m6A CDS       24284625
chr2:227663664-227663665(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//22575960//22608085
chr2:227663739-227663740(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr2:227663805-227663806(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr2:227663833-227663834(-) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//27371828//22575960//22608085
chr2:227663886-227663887(-) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:227663956-227663957(-) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:227663974-227663975(-) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:227664306-227664307(-) m6A 5'UTR       24284625//25456834//24981863//27371828//27773536
chr2:227664317-227664318(-) m6A 5'UTR       24284625//25456834//24981863//27371828//27773536
chr2:227664334-227664335(-) m6A 5'UTR       24284625//25456834//24981863//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate IRS1
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART13-5p
Interactor2: IRS1

Evidence Support:


Prediction-Evidence miRanda//PITA
Support Database VmiReg

Starting a new search, please wait ...