Basic Information:

  VIRBase ID:  

VHID00403081

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART13-5p:  MIMAT0004818          CALR:  NM_004343     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART13-5p	CALR
miRBase Accession/Entrez ID	MIMAT0004818	811
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	cC1qR//CRT//HEL-S-99n//RO//SSA

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CALR	chr19:13053850(+) A-I      intronic chr19:13053978(+) A-I      intronic chr19:13054028(+) A-I      intronic chr19:13054026(+) A-I      intronic chr19:13052132(+) A-I      intronic chr19:13052679(+) A-I      intronic chr19:13053000(+) A-I      intronic chr19:13053016(+) A-I      intronic chr19:13053017(+) A-I      intronic chr19:13053823(+) A-I      intronic chr19:13053832(+) A-I      intronic chr19:13053024(+) A-I      intronic chr19:13053023(+) A-I      intronic chr19:13052941(+) A-I      intronic chr19:13052610(+) A-I      intronic chr19:13052558(+) A-I      intronic chr19:13054074(+) A-I      intronic chr19:13054044(+) A-I      intronic chr19:13052537(+) A-I      intronic chr19:13052536(+) A-I      intronic chr19:13052436(+) A-I      intronic chr19:13052265(+) A-I      intronic chr19:13052024(+) A-I      intronic chr19:13054024(+) A-I      intronic chr19:13053973(+) A-I      intronic chr19:13053963(+) A-I      intronic chr19:13054016(+) A-I      intronic chr19:13053960(+) A-I      intronic chr19:13053954(+) A-I      intronic chr19:13053671(+) A-I      intronic chr19:13053179(+) A-I      intronic chr19:13053165(+) A-I      intronic chr19:13053142(+) A-I      intronic chr19:13053137(+) A-I      intronic chr19:13053086(+) A-I      intronic chr19:13053079(+) A-I      intronic chr19:13053062(+) A-I      intronic chr19:13053831(+) A-I      intronic chr19:13053502(+) A-I      intronic chr19:13052912(+) A-I      intronic chr19:13054121(+) A-I      intronic chr19:13052032(+) A-I      intronic chr19:13052714(+) A-I      intronic chr19:13052166(+) A-I      intronic chr19:13052818(+) A-I      intronic chr19:13052007(+) A-I      intronic chr19:13054129(+) A-I      intronic chr19:13053593(+) A-I      intronic chr19:13052008(+) A-I      intronic chr19:13052384(+) A-I      intronic chr19:13053056(+) A-I      intronic chr19:13053098(+) A-I      intronic chr19:13053979(+) A-I      intronic chr19:13052881(+) A-I      intronic chr19:13054105(+) A-I      intronic chr19:13052341(+) A-I      intronic chr19:13052430(+) A-I      intronic chr19:13053550(+) A-I      intronic chr19:13052783(+) A-I      intronic chr19:13053025(+) A-I      intronic chr19:13052421(+) A-I      intronic chr19:13052604(+) A-I      intronic chr19:13052695(+) A-I      intronic chr19:13052680(+) A-I      intronic chr19:13053830(+) A-I      intronic chr19:13052919(+) A-I      intronic chr19:13053159(+) A-I      intronic chr19:13052504(+) A-I      intronic chr19:13052034(+) A-I      intronic chr19:13052762(+) A-I      intronic chr19:13052227(+) A-I      intronic chr19:13053129(+) A-I      intronic chr19:13052692(+) A-I      intronic chr19:13052865(+) A-I      intronic chr19:13052832(+) A-I      intronic chr19:13052902(+) A-I      intronic chr19:13052780(+) A-I      intronic chr19:13053548(+) A-I      intronic chr19:13053132(+) A-I      intronic chr19:13052962(+) A-I      intronic chr19:13052005(+) A-I      intronic chr19:13052030(+) A-I      intronic chr19:13052408(+) A-I      intronic chr19:13052842(+) A-I      intronic chr19:13052986(+) A-I      intronic chr19:13053710(+) A-I      intronic chr19:13053163(+) A-I      intronic chr19:13052496(+) A-I      intronic chr19:13052792(+) A-I      intronic chr19:13053538(+) A-I      intronic chr19:13052743(+) A-I      intronic chr19:13053122(+) A-I      intronic chr19:13052694(+) A-I      intronic chr19:13053027(+) A-I      intronic chr19:13052559(+) A-I      intronic chr19:13052100(+) A-I      intronic chr19:13052708(+) A-I      intronic chr19:13054168(+) A-I      intronic chr19:13054137(+) A-I      intronic chr19:13052533(+) A-I      intronic chr19:13052769(+) A-I      intronic chr19:13054038(+) A-I      intronic chr19:13052179(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CALR	chr19:13053132(+) A-I intron -    22327324 chr19:13052005(+) A-G intron -    22484847 chr19:13052007(+) A-G intron -    22484847 chr19:13052341(+) A-G intron -    22484847 chr19:13052350(+) A-G intron -    22484847 chr19:13053025(+) A-G intron -    22484847 chr19:13053026(+) A-G intron -    22484847 chr19:13053027(+) A-G intron -    22484847 chr19:13053056(+) A-G intron -    22484847 chr19:13053084(+) A-G intron -    22484847 chr19:13053098(+) A-G intron -    22484847 chr19:13053129(+) A-G intron -    22484847 chr19:13053132(+) A-G intron -    22484847 chr19:13053502(+) A-G intron -    22484847 chr19:13053548(+) A-G intron -    22484847 chr19:13053550(+) A-G intron -    22484847 chr19:13054038(+) A-G intron -    22484847 chr19:13054129(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CALR	chr19:13049698-13049699(+) m6A exon//intron       - chr19:13049955-13049956(+) m6A CDS//exon       - chr19:13049978-13049979(+) m6A CDS//exon       22575960 chr19:13050249-13050250(+) m6A CDS//exon//intron       27773535//22575960 chr19:13050341-13050342(+) m6A CDS//exon//intron       26404942//27773535//22575960 chr19:13050352-13050353(+) m6A CDS//exon//intron       26404942//27773535//22575960 chr19:13050400-13050401(+) m6A CDS//exon//intron       26404942//27773535//22575960 chr19:13050405-13050406(+) m6A CDS//exon//intron       26404942//27773535//22575960 chr19:13050421-13050422(+) m6A CDS//exon//intron       26404942//27773535//22575960 chr19:13050947-13050948(+) m6A CDS//exon       26404942//27773535//22575960 chr19:13051099-13051100(+) m6A CDS//exon       26404942//27773535//22575960 chr19:13051165-13051166(+) m6A CDS//exon       26404942//27773535//22575960 chr19:13051208-13051209(+) m6A CDS       24981863//26404942//27773535//22575960 chr19:13051216-13051217(+) m6A CDS       24981863//26404942//27773535//22575960 chr19:13051233-13051234(+) Am CDS       - chr19:13051252-13051253(+) m6A CDS       24981863//26404942//27773535//22575960 chr19:13051361-13051362(+) m6A CDS       24981863//26404942//27773535//22575960 chr19:13051406-13051407(+) m6A CDS       24981863//26404942//27773535//22575960 chr19:13051437-13051438(+) m6A CDS       24981863//26404942//27773535//22575960 chr19:13051454-13051455(+) m6A CDS       24981863//26404942//27773535//22575960 chr19:13051656-13051657(+) Y CDS       26075521 chr19:13051690-13051691(+) m6A CDS       24209618//24981863//26404942//27773535//22575960 chr19:13054034-13054035(+) m6A exon//intron       24209618//26404942//27773535//22575960 chr19:13054537-13054538(+) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr19:13054548-13054549(+) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr19:13054577-13054578(+) Gm CDS//exon//intron       - chr19:13054587-13054588(+) m1A CDS//exon//intron       26863196//26863410 chr19:13054590-13054591(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr19:13054623-13054624(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr19:13054641-13054642(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr19:13054671-13054672(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr19:13054749-13054750(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr19:13054807-13054808(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr19:13054815-13054816(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr19:13054923-13054924(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr19:13055203-13055204(+) m6A 3'UTR       24284625//27773535 chr19:13055263-13055264(+) m6A 3'UTR       24284625//27773535 chr19:13055270-13055271(+) m6A 3'UTR       24284625//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CALR	Chromatin K562 cells     - Cytosol HeLa-S3 cells     - Cytosolic polysome Human T lymphocytes (Jurkat E6-1)     12923260 Endoplasmic reticulum HEK-293T cells     21431749 Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Endoplasmic reticulum COS-7 cells|U2OS cells     22679391 ER-bound polysome Human T lymphocytes (Jurkat E6-1)     12923260 Exosome Blood     - Membrane-bound ribosome Cell line (HeLa)     18192611 Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus COS-7 cells     22679391 Nucleus HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600 Ribosome HeLa cells     25063809

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART13-5p
Interactor2: CALR

Evidence Support:

Prediction-Evidence	PITA//RNAHybrid
Support Database	VmiReg