Detail Information

Basic Information:


  VIRBase ID:  

VHID00402815

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-5p:           STAC2:      

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Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART10-5p STAC2
miRBase
Accession/Entrez ID		 MIMAT0004817 342667
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - 24b2//24b2/STAC2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR STAC2
chr17:37367733(-) A-I      3'UTR
chr17:37367732(-) A-I      3'UTR
chr17:37367718(-) A-I      3'UTR
chr17:37367666(-) A-I      3'UTR
chr17:37367670(-) A-I      3'UTR
chr17:37367675(-) A-I      3'UTR
chr17:37367676(-) A-I      3'UTR
chr17:37367699(-) A-I      3'UTR
chr17:37367703(-) A-I      3'UTR
chr17:37367715(-) A-I      3'UTR
chr17:37377344(-) A-I      intronic
chr17:37377321(-) A-I      intronic
chr17:37375066(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase STAC2
chr17:37367210-37367211(-) m6A 3'UTR       24981863
chr17:37367243-37367244(-) m6A 3'UTR       25456834//24981863//27371828
chr17:37367299-37367300(-) m6A 3'UTR       25456834//27371828
chr17:37367352-37367353(-) m6A 3'UTR       25456834//27371828
chr17:37367417-37367418(-) m6A 3'UTR       25456834//24981863//27371828
chr17:37367435-37367436(-) m6A 3'UTR       25456834//24981863//27371828
chr17:37367453-37367454(-) m6A 3'UTR       25456834//24981863//27371828
chr17:37367485-37367486(-) m6A 3'UTR       25456834//24981863//27371828
chr17:37367497-37367498(-) m6A 3'UTR       25456834//24981863//27371828
chr17:37367507-37367508(-) m6A 3'UTR       25456834//24981863//27371828
chr17:37367524-37367525(-) m6A 3'UTR       25456834//24981863//27371828
chr17:37367564-37367565(-) m6A 3'UTR       24284625//25456834//27371828
chr17:37367633-37367634(-) m6A 3'UTR       25456834
chr17:37367848-37367849(-) m6A 3'UTR       24981863
chr17:37367868-37367869(-) m6A 3'UTR       24981863
chr17:37367916-37367917(-) m6A 3'UTR       24981863
chr17:37367926-37367927(-) m6A 3'UTR       24981863
chr17:37371049-37371050(-) m6A 3'UTR//CDS       -
chr17:37371070-37371071(-) m6A 3'UTR//CDS       -
chr17:37381691-37381692(-) m6A CDS       25456834
chr17:37381725-37381726(-) m6A CDS       25456834//27773536
chr17:37381757-37381758(-) m6A 5'UTR       25456834//27773536
chr17:37381999-37382000(-) m6A 5'UTR       25456834//27371828//27773536
chr17:37382081-37382082(-) m6A 5'UTR       25456834//27371828
chr17:37382087-37382088(-) m6A 5'UTR       25456834//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate STAC2
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART10-5p
Interactor2: STAC2

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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