Basic Information:

  VIRBase ID:  

VHID00402448

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-5p:  MIMAT0004817          CDAN1:  NM_138477     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART10-5p	CDAN1
miRBase Accession/Entrez ID	MIMAT0004817	146059
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CDA1//CDAI//CDAN1A//DLT//PRO1295

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CDAN1	chr15:43016095(-) A-I      3'UTR chr15:43016015(-) A-I      3'UTR chr15:43016103(-) A-I      3'UTR chr15:43016123(-) A-I      3'UTR chr15:43016175(-) A-I      3'UTR chr15:43016102(-) A-I      3'UTR chr15:43016028(-) A-I      3'UTR chr15:43016100(-) A-I      3'UTR chr15:43016180(-) A-I      3'UTR chr15:43017947(-) A-I      intronic chr15:43026962(-) A-I      intronic chr15:43016042(-) A-I      3'UTR chr15:43016068(-) A-I      3'UTR chr15:43016032(-) A-I      3'UTR chr15:43016060(-) A-I      3'UTR chr15:43016164(-) A-I      3'UTR chr15:43016126(-) A-I      3'UTR chr15:43016000(-) A-I      3'UTR chr15:43016041(-) A-I      3'UTR chr15:43016130(-) A-I      3'UTR chr15:43016166(-) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CDAN1	chr15:43023267(-) T-G exon CDS    21725310

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CDAN1	chr15:43015773-43015774(-) m6A 3'UTR//exon       27773535 chr15:43015808-43015809(-) m6A 3'UTR//exon       27773535 chr15:43015826-43015827(-) m6A 3'UTR//exon       24209618//27773535 chr15:43015879-43015880(-) m6A 3'UTR//exon       24209618//24981863//27773535 chr15:43015894-43015895(-) m6A 3'UTR//exon       24209618//24981863//27773535 chr15:43015908-43015909(-) m6A 3'UTR//exon       24209618//24981863//27773535 chr15:43015931-43015932(-) m6A 3'UTR//exon       24209618//24981863//27773535 chr15:43015999-43016000(-) m6A 3'UTR//exon       24209618//24981863//27773535 chr15:43016009-43016010(-) m6A 3'UTR//exon       24209618//24981863//27773535 chr15:43016099-43016100(-) m6A 3'UTR//exon       24981863//27773535//22608085 chr15:43016122-43016123(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085 chr15:43016146-43016147(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085 chr15:43016236-43016237(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr15:43016280-43016281(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr15:43016346-43016347(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr15:43016567-43016568(-) m6A 3'UTR//exon       27371828 chr15:43016605-43016606(-) m6A 3'UTR//exon       27371828 chr15:43016643-43016644(-) m6A 3'UTR//exon       27371828 chr15:43016650-43016651(-) m6A 3'UTR//exon       27371828 chr15:43016716-43016717(-) m6A 3'UTR//CDS//exon       27371828 chr15:43016751-43016752(-) m6A 3'UTR//CDS//exon       27371828 chr15:43016812-43016813(-) m6A 3'UTR//CDS//exon       27371828 chr15:43023488-43023489(-) Am CDS       - chr15:43028150-43028151(-) m6A CDS       24284625//27773536 chr15:43028208-43028209(-) m6A CDS       27773536 chr15:43028556-43028557(-) m6A CDS       27773536 chr15:43028845-43028846(-) m6A CDS       27773536 chr15:43028904-43028905(-) m6A CDS       27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CDAN1	Chromatin K562 cells     - Cytosol HeLa-S3 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART10-5p
Interactor2: CDAN1

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg