Basic Information:

  VIRBase ID:  

VHID00402387

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-5p:  MIMAT0004817          SHROOM1:  NM_001172700     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART10-5p	SHROOM1
miRBase Accession/Entrez ID	MIMAT0004817	134549
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	APXL2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SHROOM1	chr5:132163052(-) A-I      intronic chr5:132163064(-) A-I      intronic chr5:132163065(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SHROOM1	chr5:132158229(-) T-C exon 3'UTR    21725310

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SHROOM1	chr5:132157893-132157894(-) m6A 3'UTR       27773535 chr5:132157963-132157964(-) m6A 3'UTR       27773535 chr5:132158082-132158083(-) m6A 3'UTR       27773535 chr5:132158151-132158152(-) m6A 3'UTR       27773535 chr5:132158249-132158250(-) m6A 3'UTR       27773535 chr5:132158272-132158273(-) m6A 3'UTR       24209618//27773535 chr5:132158385-132158386(-) m6A 3'UTR       27773535 chr5:132158531-132158532(-) m6A CDS       25456834//24981863//27773536 chr5:132158602-132158603(-) m6A CDS       25456834//24981863//27773536 chr5:132158960-132158961(-) m6A CDS       27773536 chr5:132159336-132159337(-) m6A CDS//exon       27773535 chr5:132159393-132159394(-) m6A CDS//exon       27773535 chr5:132159627-132159628(-) m6A CDS       24981863 chr5:132159825-132159826(-) m6A CDS//exon       24284625//24981863 chr5:132159849-132159850(-) m6A CDS//exon       24284625//24209618//24981863//22608085 chr5:132159894-132159895(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085 chr5:132159932-132159933(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085 chr5:132160013-132160014(-) m6A CDS//exon       24284625//24209618//24981863//27773535 chr5:132160064-132160065(-) m6A CDS//exon       24284625//24981863//27773535 chr5:132160082-132160083(-) m6A CDS//exon       24284625//27773535 chr5:132160336-132160337(-) m6A CDS//intron       27773535 chr5:132160424-132160425(-) m6A CDS//intron       27773535 chr5:132160440-132160441(-) m6A CDS//intron       27773535 chr5:132160717-132160718(-) m6A CDS//exon       25456834 chr5:132160722-132160723(-) m6A CDS//exon       25456834 chr5:132160735-132160736(-) m6A CDS//exon       25456834//24981863 chr5:132160743-132160744(-) m6A CDS//exon       25456834//24981863 chr5:132160802-132160803(-) m6A exon//intron       25456834//24981863//27773535//27773536 chr5:132160807-132160808(-) m6A exon//intron       25456834//24981863//27773535//27773536 chr5:132160871-132160872(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27773536 chr5:132160969-132160970(-) m6A CDS//exon       24284625//25456834//24981863//27773536 chr5:132160975-132160976(-) m6A CDS       24284625//25456834//24981863//27773536 chr5:132161210-132161211(-) m6A CDS       24209618//25456834//24981863//27773536//22575960//22608085 chr5:132161509-132161510(-) m6A CDS       24209618//24981863//27773536 chr5:132161517-132161518(-) m6A CDS       24209618//24981863//27773536 chr5:132161525-132161526(-) m6A CDS       24209618//24981863//27773536 chr5:132161650-132161651(-) m6A CDS       24284625//24209618//25456834//24981863//27773536//22608085 chr5:132161656-132161657(-) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr5:132161678-132161679(-) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr5:132161743-132161744(-) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr5:132161770-132161771(-) m6A CDS       24284625//24209618//25456834//24981863//27773536//22575960//22608085 chr5:132161817-132161818(-) m6A CDS       24284625//24209618//24981863//27773536//22575960 chr5:132161872-132161873(-) m6A 5'UTR       24284625//24209618//27773536 chr5:132162065-132162066(-) m6A 5'UTR//intron       24209618 chr5:132163188-132163189(-) m6A 5'UTR//intron       24209618 chr5:132166462-132166463(-) m6A 5'UTR       27773536 chr5:132166469-132166470(-) m6A 5'UTR       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SHROOM1	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART10-5p
Interactor2: SHROOM1

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg