Basic Information:

  VIRBase ID:  

VHID00402046

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-5p:  MIMAT0004817          MFSD2A:  NM_001349822     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART10-5p	MFSD2A
miRBase Accession/Entrez ID	MIMAT0004817	84879
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	MCPH15//MFSD2//NEDMISBA//NLS1//SLC59A1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	MFSD2A	chr1:40425456(+) A-I      intronic chr1:40425450(+) A-I      intronic chr1:40425471(+) A-I      intronic chr1:40427646(+) A-I      intronic chr1:40425444(+) A-I      intronic chr1:40427690(+) A-I      intronic chr1:40425449(+) A-I      intronic chr1:40427698(+) A-I      intronic chr1:40427714(+) A-I      intronic chr1:40427592(+) A-I      intronic chr1:40425193(+) A-I      intronic chr1:40425409(+) A-I      intronic chr1:40425481(+) A-I      intronic chr1:40427659(+) A-I      intronic chr1:40425534(+) A-I      intronic chr1:40427702(+) A-I      intronic chr1:40427695(+) A-I      intronic chr1:40425447(+) A-I      intronic chr1:40425531(+) A-I      intronic chr1:40427748(+) A-I      intronic chr1:40425395(+) A-I      intronic chr1:40427693(+) A-I      intronic chr1:40427687(+) A-I      intronic chr1:40425495(+) A-I      intronic chr1:40427729(+) A-I      intronic chr1:40427620(+) A-I      intronic chr1:40425448(+) A-I      intronic chr1:40425474(+) A-I      intronic chr1:40427711(+) A-I      intronic chr1:40425852(+) A-I      intronic chr1:40427660(+) A-I      intronic chr1:40425500(+) A-I      intronic chr1:40425475(+) A-I      intronic chr1:40427712(+) A-I      intronic chr1:40425452(+) A-I      intronic chr1:40427682(+) A-I      intronic chr1:40427579(+) A-I      intronic chr1:40427610(+) A-I      intronic chr1:40425490(+) A-I      intronic chr1:40425557(+) A-I      intronic chr1:40427710(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	MFSD2A	chr1:40425409(+) A-I intron -    22327324 chr1:40425474(+) A-I intron -    22327324 chr1:40425490(+) A-I intron -    22327324 chr1:40425557(+) A-I intron -    22327324 chr1:40427702(+) A-I intron -    22327324 chr1:40427711(+) A-I intron -    22327324 chr1:40425447(+) A-I intron -    21960545 chr1:40425448(+) A-I intron -    21960545 chr1:40425495(+) A-I intron -    21960545 chr1:40427610(+) A-I intron -    21960545 chr1:40422542(+) G-C intron -    21725310 chr1:40422542(+) G-T intron -    21725310 chr1:40425409(+) A-G intron -    22484847 chr1:40425448(+) A-G intron -    22484847 chr1:40425452(+) A-G intron -    22484847 chr1:40425474(+) A-G intron -    22484847 chr1:40429621(+) T-C intron -    22484847 chr1:40425481(+) A-G intron -    22484847 chr1:40425495(+) A-G intron -    22484847 chr1:40425557(+) A-G intron -    22484847 chr1:40427620(+) A-G intron -    22484847 chr1:40427687(+) A-G intron -    22484847 chr1:40427695(+) A-G intron -    22484847 chr1:40427702(+) A-G intron -    22484847 chr1:40427711(+) A-G intron -    22484847 chr1:40427712(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MFSD2A	chr1:40422763-40422764(+) m6A CDS//exon//intron       - chr1:40428871-40428872(+) Y intron       26075521 chr1:40428956-40428957(+) m6A intron       - chr1:40428992-40428993(+) m6A intron       - chr1:40429043-40429044(+) m6A intron       - chr1:40431193-40431194(+) m6A CDS//exon       24284625 chr1:40435293-40435294(+) m6A 3'UTR//exon       24284625//25456834//24981863 chr1:40435322-40435323(+) m6A 3'UTR//exon       24284625//25456834//24981863 chr1:40435343-40435344(+) m6A 3'UTR//exon       24284625//25456834//24981863 chr1:40435350-40435351(+) m6A 3'UTR//exon       24284625//25456834//24981863 chr1:40435370-40435371(+) m6A 3'UTR//exon       24284625//25456834//24981863 chr1:40435476-40435477(+) m6A 3'UTR//exon       - chr1:40435497-40435498(+) m6A 3'UTR//exon       - chr1:40435511-40435512(+) m6A 3'UTR//exon       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MFSD2A	Exosome Blood     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART10-5p
Interactor2: MFSD2A

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg