Basic Information:

  VIRBase ID:  

VHID00401896

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-5p:  MIMAT0004817          ARPC5L:  NM_030978     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART10-5p	ARPC5L
miRBase Accession/Entrez ID	MIMAT0004817	81873
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ARC16-2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ARPC5L	chr9:127625342(+) A-I      intronic chr9:127636722(+) A-I      intronic chr9:127625346(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ARPC5L	chr9:127624466-127624467(+) m6A 5'UTR       24981863 chr9:127624513-127624514(+) m6A 5'UTR       24981863 chr9:127624560-127624561(+) m6A 5'UTR       24981863 chr9:127626288-127626289(+) m6A 5'UTR       - chr9:127626293-127626294(+) m6A 5'UTR       - chr9:127626303-127626304(+) m6A 5'UTR       - chr9:127630992-127630993(+) m6A 5'UTR       24284625//24209618//24981863//27773535//22608085 chr9:127631029-127631030(+) m6A 5'UTR       24284625//24209618//24981863//22608085 chr9:127631221-127631222(+) m6A 5'UTR       24284625//25456834//24981863 chr9:127631297-127631298(+) m6A 5'UTR       24284625//25456834//24981863 chr9:127631311-127631312(+) m6A 5'UTR       24284625//25456834//24981863 chr9:127631579-127631580(+) m6A CDS       24284625//24209618//24981863//27371828//22575960 chr9:127631609-127631610(+) m6A CDS       24284625//24209618//24981863//27371828//22575960 chr9:127631630-127631631(+) m6A CDS       24284625//24209618//24981863//22575960 chr9:127631687-127631688(+) m6A CDS       24284625//24209618//22575960 chr9:127634952-127634953(+) m6A exon//intron       24284625//24209618 chr9:127634960-127634961(+) m6A exon//intron       24284625 chr9:127634968-127634969(+) m6A exon//intron       24284625 chr9:127634976-127634977(+) m6A exon//intron       24284625 chr9:127634981-127634982(+) m6A exon//intron       24284625 chr9:127635975-127635976(+) m6A CDS//exon       24209618//22575960 chr9:127636008-127636009(+) m6A CDS//exon       24209618//22575960 chr9:127637290-127637291(+) m6A CDS//exon       24209618//22575960 chr9:127637332-127637333(+) m6A CDS//exon       24209618//27773535 chr9:127639173-127639174(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr9:127639210-127639211(+) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr9:127639232-127639233(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr9:127639294-127639295(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr9:127639309-127639310(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr9:127639321-127639322(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr9:127639332-127639333(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr9:127639444-127639445(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr9:127639586-127639587(+) m6A 3'UTR//exon       24284625//24209618//27773535 chr9:127639604-127639605(+) m6A 3'UTR//exon       24284625//24209618//27773535 chr9:127639630-127639631(+) m6A 3'UTR//exon       24209618//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ARPC5L	Chromatin K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART10-5p
Interactor2: ARPC5L

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg