Detail Information

Basic Information:


  VIRBase ID:  

VHID00401894

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-5p:           TRIM56:      

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Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART10-5p TRIM56
miRBase
Accession/Entrez ID		 MIMAT0004817 81844
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - RNF109

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TRIM56
chr7:100733648(+) A-I      3'UTR
chr7:100733758(+) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TRIM56
chr7:100733648(+) A-G intron -    22484847
chr7:100733758(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TRIM56
chr7:100730090-100730091(+) m6A 5'UTR//intron       24284625//24981863
chr7:100730171-100730172(+) m6A 5'UTR//intron       24284625
chr7:100730228-100730229(+) m6A 5'UTR//intron       24284625//24981863
chr7:100730235-100730236(+) m6A 5'UTR//intron       24284625//24981863
chr7:100730269-100730270(+) m6A 5'UTR//intron       24284625//24981863
chr7:100730422-100730423(+) m6A 5'UTR       24284625//24209618
chr7:100730689-100730690(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr7:100730720-100730721(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr7:100730776-100730777(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr7:100730815-100730816(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr7:100730843-100730844(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr7:100730870-100730871(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr7:100730957-100730958(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr7:100731013-100731014(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr7:100731035-100731036(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr7:100731176-100731177(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr7:100731188-100731189(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr7:100731246-100731247(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr7:100731263-100731264(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr7:100731349-100731350(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr7:100731449-100731450(+) m1A CDS//intron       26863196
chr7:100731671-100731672(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr7:100731677-100731678(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr7:100731796-100731797(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:100731804-100731805(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:100731844-100731845(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:100731868-100731869(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:100731892-100731893(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:100731905-100731906(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:100731916-100731917(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:100731936-100731937(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:100731960-100731961(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:100732062-100732063(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr7:100732103-100732104(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960
chr7:100732175-100732176(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960
chr7:100732394-100732395(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960
chr7:100732547-100732548(+) m6A CDS//intron       24284625//24209618//25456834//24981863
chr7:100732709-100732710(+) m6A CDS//intron       24284625//24209618
chr7:100732733-100732734(+) m6A CDS//intron       24284625//24209618
chr7:100732822-100732823(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960
chr7:100732853-100732854(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960
chr7:100732871-100732872(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960
chr7:100732945-100732946(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863
chr7:100732995-100732996(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863
chr7:100733030-100733031(+) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863
chr7:100733206-100733207(+) m6A 3'UTR//intron       24284625//25456834//24981863
chr7:100733285-100733286(+) m6A 3'UTR//intron       24284625//25456834//24981863
chr7:100733296-100733297(+) m6A 3'UTR//intron       24284625//25456834//24981863
chr7:100733313-100733314(+) m6A 3'UTR//intron       24284625//25456834//24981863
chr7:100733466-100733467(+) m6A 3'UTR//exon//intron       24284625
chr7:100734258-100734259(+) m6A 3'UTR//intron       -
chr7:100734266-100734267(+) m6A 3'UTR//intron       -
chr7:100734285-100734286(+) m6A 3'UTR//intron       -
chr7:100734304-100734305(+) m6A 3'UTR//intron       -
chr7:100734346-100734347(+) m6A 3'UTR//intron       -
chr7:100734360-100734361(+) m6A 3'UTR//intron       -
chr7:100734389-100734390(+) m6A 3'UTR//intron       -
chr7:100734498-100734499(+) m6A 3'UTR//intron       -
chr7:100734505-100734506(+) m6A 3'UTR//intron       -
chr7:100734525-100734526(+) m6A 3'UTR//intron       -
chr7:100734541-100734542(+) m6A 3'UTR//intron       -
chr7:100734603-100734604(+) m6A 3'UTR//intron       -
chr7:100734623-100734624(+) m6A 3'UTR//intron       -
chr7:100734633-100734634(+) m6A 3'UTR//intron       -
chr7:100734654-100734655(+) m6A 3'UTR//intron       -
chr7:100734719-100734720(+) m6A 3'UTR//intron       -
chr7:100734928-100734929(+) m6A 3'UTR//CDS       24981863
chr7:100734998-100734999(+) m6A 3'UTR//CDS       24981863
chr7:100735036-100735037(+) m6A 3'UTR       -
chr7:100735129-100735130(+) m6A 3'UTR       -
chr7:100736594-100736595(+) m6A 3'UTR       -
chr7:100736644-100736645(+) m6A 3'UTR       -
chr7:100736661-100736662(+) m6A 3'UTR       -
chr7:100736720-100736721(+) m6A 3'UTR       -
chr7:100736738-100736739(+) m6A 3'UTR       -
chr7:100736782-100736783(+) m6A 3'UTR       -
chr7:100737343-100737344(+) m6A 3'UTR       24284625//24981863
chr7:100737377-100737378(+) m6A 3'UTR       24284625//24981863
chr7:100737384-100737385(+) m6A 3'UTR       24284625//24981863
chr7:100737467-100737468(+) m6A 3'UTR       24284625//27773535
chr7:100737559-100737560(+) m6A 3'UTR       24981863//27773535
chr7:100738037-100738038(+) m6A 3'UTR       -
chr7:100738048-100738049(+) m6A 3'UTR       -
chr7:100738069-100738070(+) m6A 3'UTR       -
chr7:100738307-100738308(+) m6A 3'UTR       24284625
chr7:100738369-100738370(+) m6A 3'UTR       24284625
chr7:100738644-100738645(+) m6A 3'UTR       24284625
chr7:100738729-100738730(+) m6A 3'UTR       24284625
chr7:100738767-100738768(+) m6A 3'UTR       -
chr7:100738857-100738858(+) m6A 3'UTR       -
chr7:100738866-100738867(+) m6A 3'UTR       -
chr7:100739040-100739041(+) m6A 3'UTR       24981863//27773535
chr7:100739131-100739132(+) m6A 3'UTR       -
chr7:100739155-100739156(+) m6A 3'UTR       24209618
chr7:100739195-100739196(+) m6A 3'UTR       24209618
chr7:100739202-100739203(+) m6A 3'UTR       24209618
chr7:100739292-100739293(+) m6A 3'UTR       24981863
chr7:100739459-100739460(+) m6A 3'UTR       -
chr7:100740444-100740445(+) m6A 3'UTR       -
chr7:100740481-100740482(+) m6A 3'UTR       -
chr7:100740539-100740540(+) m6A 3'UTR       24981863
chr7:100740586-100740587(+) m6A 3'UTR       24981863
chr7:100740617-100740618(+) m6A 3'UTR       24981863
chr7:100740630-100740631(+) m6A 3'UTR       24981863//27773535
chr7:100740675-100740676(+) m6A 3'UTR       24981863//27773535
chr7:100740692-100740693(+) m6A 3'UTR       24981863//27773535
chr7:100740734-100740735(+) m6A 3'UTR       24209618//24981863//27773535
chr7:100740778-100740779(+) m6A 3'UTR       24209618//24981863//27773535
chr7:100740805-100740806(+) m6A 3'UTR       24209618//24981863//27773535
chr7:100740812-100740813(+) m6A 3'UTR       24209618//24981863//27773535
chr7:100740854-100740855(+) m6A 3'UTR       24981863//27773535
chr7:100740894-100740895(+) m6A 3'UTR       24981863//27773535
chr7:100740923-100740924(+) m6A 3'UTR       25456834//24981863//22608085
chr7:100740978-100740979(+) m6A 3'UTR       25456834//24981863//22608085
chr7:100741002-100741003(+) m6A 3'UTR       25456834//24981863//22608085
chr7:100741090-100741091(+) m6A 3'UTR       25456834//24981863
chr7:100741106-100741107(+) m6A 3'UTR       25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TRIM56
Exosome Blood     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART10-5p
Interactor2: TRIM56

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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