Basic Information:

  VIRBase ID:  

VHID00401889

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-5p:  MIMAT0004817          TRIM7:  NM_203296     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART10-5p	TRIM7
miRBase Accession/Entrez ID	MIMAT0004817	81786
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GNIP//RNF90

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TRIM7	chr5:180624146(-) A-I      ncRNA chr5:180628684(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TRIM7	chr5:180621141-180621142(-) m6A 3'UTR//exon       24284625//24981863//27371828//22575960//22608085 chr5:180621174-180621175(-) m6A 3'UTR//exon       24284625//24981863//27371828//22575960//22608085 chr5:180621218-180621219(-) m6A 3'UTR//exon       24284625//24981863//22575960//22608085 chr5:180621225-180621226(-) m6A 3'UTR//exon       24284625//24981863//22575960//22608085 chr5:180621233-180621234(-) m6A 3'UTR//exon       24284625//24981863//22575960//22608085 chr5:180621257-180621258(-) m6A 3'UTR//exon       24284625//24981863 chr5:180621333-180621334(-) m6A 3'UTR//exon       24284625//24981863 chr5:180621368-180621369(-) m6A 3'UTR//exon       24284625//24981863 chr5:180621406-180621407(-) m6A 3'UTR//exon       24284625//24209618//24981863//22608085 chr5:180621477-180621478(-) m6A 3'UTR//exon       24284625//24209618//24981863//27371828//22608085 chr5:180621581-180621582(-) m6A 3'UTR//exon       24284625//25456834//24981863//28052920//27371828//22575960//22608085 chr5:180621614-180621615(-) m6A 3'UTR//exon       24284625//25456834//24981863//28052920//27371828//22575960//22608085 chr5:180621625-180621626(-) m6A 3'UTR//exon       24284625//25456834//24981863//28052920//27371828//22575960//22608085 chr5:180621640-180621641(-) m6A 3'UTR//exon       24284625//25456834//24981863//28052920//27371828//22575960//22608085 chr5:180621708-180621709(-) m6A 3'UTR//exon       24284625//24981863//27371828//22575960//22608085 chr5:180621741-180621742(-) m6A 3'UTR//exon       24284625//24209618//24981863//27371828//22608085 chr5:180621835-180621836(-) m6A 3'UTR//exon       24284625//24981863//27371828//22608085 chr5:180621972-180621973(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27371828//27773536//22575960//22608085 chr5:180621985-180621986(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27371828//27773536//22575960//22608085 chr5:180622032-180622033(-) m6A 3'UTR//exon       24284625//24209618//24981863//27371828//22608085 chr5:180622265-180622266(-) m6A CDS//exon       24284625 chr5:180622304-180622305(-) m6A CDS//exon       24284625//27371828 chr5:180622586-180622587(-) m6A CDS//exon       24284625//27371828 chr5:180622702-180622703(-) m6A exon//intron       - chr5:180622730-180622731(-) m6A exon//intron       - chr5:180626882-180626883(-) m6A CDS       27371828 chr5:180626944-180626945(-) m6A CDS       24284625//27371828//27773536 chr5:180626979-180626980(-) m6A CDS       24284625//27371828//27773536 chr5:180627078-180627079(-) m6A 5'UTR//CDS       24284625//27371828 chr5:180627084-180627085(-) m6A CDS//intron       24284625//27371828 chr5:180630374-180630375(-) m6A 3'UTR//exon//intron       22608085 chr5:180630444-180630445(-) m6A 3'UTR//exon//intron       24284625//24209618//27371828//22608085 chr5:180630493-180630494(-) m6A 3'UTR//5'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27371828//22608085 chr5:180630512-180630513(-) m6A 5'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27371828//22608085 chr5:180630593-180630594(-) m6A 5'UTR//CDS//exon       24284625//24209618//25456834//27371828//27773536//22608085 chr5:180630601-180630602(-) m6A 5'UTR//CDS//exon       24284625//24209618//25456834//27371828//27773536//22608085 chr5:180630811-180630812(-) m6A 5'UTR//exon//intron       27773536 chr5:180632076-180632077(-) m6A CDS       27371828//27773536 chr5:180632088-180632089(-) m6A CDS       27371828//27773536 chr5:180632095-180632096(-) m6A CDS       27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TRIM7	Exosome Blood     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART10-5p
Interactor2: TRIM7

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg