Basic Information:

  VIRBase ID:  

VHID00401888

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-5p:  MIMAT0004817          PPP1R14C:  NM_030949     

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Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BART10-5p	PPP1R14C
miRBase Accession/Entrez ID	MIMAT0004817	81706
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CPI17-like//KEPI//NY-BR-81

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PPP1R14C	chr6:150505627(+) A-I      intronic chr6:150556377(+) A-I      intronic chr6:150556382(+) A-I      intronic chr6:150505622(+) A-I      intronic chr6:150495982(+) A-I      intronic chr6:150555808(+) A-I      intronic chr6:150481645(+) A-I      intronic chr6:150555799(+) A-I      intronic chr6:150504773(+) A-I      intronic chr6:150556354(+) A-I      intronic chr6:150539418(+) A-I      intronic chr6:150539428(+) A-I      intronic chr6:150540062(+) A-I      intronic chr6:150502440(+) A-I      intronic chr6:150483291(+) A-I      intronic chr6:150488325(+) A-I      intronic chr6:150539997(+) A-I      intronic chr6:150543149(+) A-I      intronic chr6:150541157(+) A-I      intronic chr6:150528049(+) A-I      intronic chr6:150556509(+) A-I      intronic chr6:150556478(+) A-I      intronic chr6:150558379(+) A-I      intronic chr6:150562790(+) A-I      intronic chr6:150540058(+) A-I      intronic chr6:150539961(+) A-I      intronic chr6:150562767(+) A-I      intronic chr6:150539897(+) A-I      intronic chr6:150555752(+) A-I      intronic chr6:150539915(+) A-I      intronic chr6:150556428(+) A-I      intronic chr6:150539207(+) A-I      intronic chr6:150470555(+) A-I      intronic chr6:150564494(+) A-I      intronic chr6:150564523(+) A-I      intronic chr6:150539824(+) A-I      intronic chr6:150540040(+) A-I      intronic chr6:150469977(+) A-I      intronic chr6:150470147(+) A-I      intronic chr6:150555838(+) A-I      intronic chr6:150564588(+) A-I      intronic chr6:150564511(+) A-I      intronic chr6:150540050(+) A-I      intronic chr6:150539971(+) A-I      intronic chr6:150555770(+) A-I      intronic chr6:150470510(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PPP1R14C	chr6:150464326-150464327(+) m6A 5'UTR       24209618 chr6:150464464-150464465(+) m6A CDS       24209618 chr6:150535931-150535932(+) m6A CDS       24209618 chr6:150537972-150537973(+) m6A CDS       24209618//24981863 chr6:150537982-150537983(+) m6A CDS       24209618//24981863 chr6:150569925-150569926(+) m6A CDS       24209618//24981863//22608085 chr6:150569963-150569964(+) m6A 3'UTR       24209618//24981863//22608085 chr6:150569973-150569974(+) m6A 3'UTR       24209618//24981863//22608085 chr6:150570021-150570022(+) m6A 3'UTR       24209618//24981863//22608085 chr6:150570051-150570052(+) m6A 3'UTR       24209618//24981863//22608085 chr6:150570109-150570110(+) m6A 3'UTR       24209618//24981863//22608085 chr6:150570227-150570228(+) m6A 3'UTR       24209618//25456834//24981863//22608085 chr6:150570269-150570270(+) m6A 3'UTR       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PPP1R14C	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BART10-5p
Interactor2: PPP1R14C

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg