Detail Information

Basic Information:


  VIRBase ID:  

VHID00401832

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BART10-5p:           FAAP100:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BART10-5p FAAP100
miRBase
Accession/Entrez ID		 MIMAT0004817 80233
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - C17orf70

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR FAAP100
chr17:79515590(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase FAAP100
chr17:79507272-79507273(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr17:79507285-79507286(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr17:79507313-79507314(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr17:79507443-79507444(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr17:79507463-79507464(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr17:79507481-79507482(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr17:79507630-79507631(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr17:79507725-79507726(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr17:79507763-79507764(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr17:79507954-79507955(-) m6A 3'UTR//CDS       24284625//27773536//22575960
chr17:79513502-79513503(-) m6A 3'UTR//intron       24284625
chr17:79513552-79513553(-) m6A CDS//intron       24284625
chr17:79514031-79514032(-) m6A 3'UTR//CDS       24284625
chr17:79514063-79514064(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27371828//27773536//22575960
chr17:79514086-79514087(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27371828//27773536//22575960
chr17:79514164-79514165(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr17:79514245-79514246(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr17:79514254-79514255(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr17:79514398-79514399(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr17:79514437-79514438(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr17:79514483-79514484(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr17:79514494-79514495(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr17:79514515-79514516(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr17:79514552-79514553(-) m6A 3'UTR//CDS       24284625//24981863//27371828//27773536
chr17:79514595-79514596(-) m6A 3'UTR//CDS       24284625//27371828//27773536
chr17:79514668-79514669(-) m6A 3'UTR//CDS       24284625//27773535
chr17:79516324-79516325(-) m6A 3'UTR//CDS       24284625
chr17:79516330-79516331(-) m6A 3'UTR//CDS       24284625
chr17:79517320-79517321(-) m6A 3'UTR//CDS       27773536
chr17:79517365-79517366(-) m1A 3'UTR//CDS       26863410
chr17:79517651-79517652(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27371828//22575960//22608085
chr17:79518031-79518032(-) m6A 3'UTR//CDS       24284625//24981863
chr17:79518109-79518110(-) m6A 3'UTR//5'UTR//CDS       24284625//27371828
chr17:79518163-79518164(-) m6A 3'UTR//5'UTR//CDS       24284625//27371828
chr17:79518205-79518206(-) m6A 3'UTR//5'UTR//CDS       24284625//27371828
chr17:79518862-79518863(-) m6A 3'UTR//intron       27773536
chr17:79518903-79518904(-) m6A 3'UTR//intron       24284625//27773536
chr17:79518971-79518972(-) m6A 5'UTR//CDS//intron       24284625//27773536
chr17:79520480-79520481(-) m6A CDS       -
chr17:79520759-79520760(-) m6A 5'UTR       -
chr17:79520806-79520807(-) m6A 5'UTR       22608085
chr17:79520889-79520890(-) m6A 5'UTR       22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate FAAP100
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BART10-5p
Interactor2: FAAP100

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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